Description Usage Arguments Value Author(s) See Also Examples
View source: R/post_analysis.R
Plots the an histogram representing the frequencies of scores in the output variable of the GO_analyse() function.
This function can also be used on the output of subset_scores()
function as it returns a value formatted identically to the output of the
GO_analyse()
function.
1 2 3 4 | hist_scores(result,
main=paste("Distribution of average scores in",
deparse(substitute(result))),
xlab="Average score", ...)
|
result |
The output of the |
main, xlab |
These arguments to title have useful defaults here. |
... |
Additional arguments passed on to |
Returns the output of the hist()
function.
Kevin Rue-Albrecht
Method hist
,
and GO_analyse
.
1 2 3 4 5 6 7 8 9 10 11 12 13 | # load the sample output data with p.values computed
data(AlvMac_results.pVal)
# Histogram of scores (labelled with counts)
hist_scores(result=AlvMac_results, breaks=20, labels=TRUE)
# filter for Biological Processes associated with 5+ genes and <=0.05 P-value
filtered_results <- subset_scores(
result=AlvMac_results.pVal, total_count=5, p.val=0.05,
namespace="BP")
# Histogram of scores (labelled with counts)
hist_scores(result=filtered_results, breaks=20, labels=TRUE)
|
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