kevinrue/velociraptor: Toolkit for Single-Cell Velocity
This package provides Bioconductor-friendly wrappers for RNA velocity calculations in single-cell RNA-seq data. We use the basilisk package to manage Conda environments, and the zellkonverter package to convert data structures between SingleCellExperiment (R) and AnnData (Python). The information produced by the velocity methods is stored in the various components of the SingleCellExperiment class.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Coverage GeneExpression Sequencing SingleCell |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.13.1 |
| URL | https://github.com/kevinrue/velociraptor |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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