velociraptor-package: velociraptor: Toolkit for Single-Cell Velocity

In kevinrue/velociraptor: Toolkit for Single-Cell Velocity

velociraptor: Toolkit for Single-Cell Velocity

Description

This package provides Bioconductor-friendly wrappers for RNA velocity calculations in single-cell RNA-seq data. We use the basilisk package to manage Conda environments, and the zellkonverter package to convert data structures between SingleCellExperiment (R) and AnnData (Python). The information produced by the velocity methods is stored in the various components of the SingleCellExperiment class.

Author(s)

Maintainer: Kevin Rue-Albrecht [e-mail] (ORCID)

Authors:

• Aaron Lun [e-mail] (ORCID)

• Charlotte Soneson [e-mail] (ORCID)

• Michael Stadler [e-mail] (ORCID)

See Also

Useful links:

• https://github.com/kevinrue/velociraptor

• Report bugs at https://github.com/kevinrue/velociraptor/issues

kevinrue/velociraptor documentation built on Feb. 12, 2024, 4:34 a.m.