analyze_hisafe: Shortcut to Hi-sAFe analysis

In kevinwolz/hisafer: An R Toolbox for the Hi-sAFe Biophysical Agroforestry Model

Description

Runs the various Hi-sAFe analysis functions from a single call.

Usage

analyze_hisafe(
  hop,
  carbon = TRUE,
  light = TRUE,
  nitrogen = TRUE,
  water = TRUE,
  carbon.daily = TRUE,
  light.daily = TRUE,
  nitrogen.daily = TRUE,
  water.daily = TRUE,
  carbon.increment = TRUE,
  carbon.allocation = TRUE,
  tree.ids = "all"
)

Arguments

hop	An object of class hop or face.
carbon	Logical indicating if annual carbon plot should be made.
light	Logical indicating if annual light plot should be made.
nitrogen	Logical indicating if annual nitrogen plot should be made.
water	Logical indicating if annual water plot should be made.
carbon.daily	Logical indicating if daily carbon plots should be made.
light.daily	Logical indicating if daily light plots should be made.
nitrogen.daily	Logical indicating if daily nitrogens plot should be made.
water.daily	Logical indicating if daily water plots should be made.
carbon.increment	Logical indicating if daily carbon increment plots should be made.
carbon.allocation	Logical indicating if daily carbon allocation plots should be made.
tree.ids	A numeric vector indicating a subset of tree ids to plot. Use "all" to include all available values. This only applies for carbon-related plots.

Value

Invisibly returns hop.

See Also

Other hisafe analysis functions: LER_summary(), LER(), cycle_summary(), hisafe_budget(), plot_hisafe_cycle_bar(), plot_hisafe_cycle_ts(), stics_budget_comp(), write_hop()

Examples

## Not run: 
analyze_hisafe(myhop)

## End(Not run)

kevinwolz/hisafer documentation built on Oct. 19, 2020, 4:43 p.m.