Man pages for kevinwolz/sysdesign
An R Toolbox for Creating & Analyzing Systematic Experimental Designs in Biology
| add_one | Add one |
| annotate_pop | Annotate population with fitness and stats |
| assign_species | Assign speices identities in a Nelder Fan biculture design |
| A_to_triangle | Apply symmetry from one trianlge region across other two... |
| compile_pop | Compile popluation data |
| goelz | Create a Goelz Triangle experimental design |
| goelz_add_border | Add border rows to a Goelz Triangle experimental design |
| goelz_class_check | Check if an object if of class goelz |
| goelz_corners | Get coordinates of corners of Goelz Triangle experimental... |
| goelz_count | Count total plants in Goelz Triangle design. |
| goelz_fitness | Calculate fitness of Goelz Trianlge design |
| goelz_guides | Get coordinates of guides for Goelz Triangle experimental... |
| goelz_mirror | Mirror a Goelz Triangle experimental design |
| goelz_optim | Create conformity-optimized Goelz Triangle experimental... |
| goelz_starts | Get coordinates of row starts for Goelz Triangle experimental... |
| mutInteger | Integer mutation |
| mutShuffle | Shuffle mutation |
| name_species | Add a column with species names |
| nelder | Create a Nelder Fan experimental design |
| nelder_biculture | Create a Biculture Nelder Fan experimental design |
| nelder_biculture_class_check | Check if an object if of class nelder-biculture |
| nelder_biculture_competition | Calculate competition indices for a Nelder Fan experimental... |
| nelder_biculture_optim | Create a composition-density-conformity-optimized Biculture... |
| nelder_calc | Calculate Nelder Fan design |
| nelder_class_check | Check if an object if of class nelder |
| nelder_decision | Create a Nelder Fan experimental design decision table |
| nelder_fitness | Calculate the fitness of a Nelder Fan biculture design |
| nelder_interspoke_distance | Calculate distance between two individuals in the same arc... |
| plot_fitness_trajectory | Plot a diagnositc display of the fitness trajectory |
| plot_goelz | Plot a Goelz Triangle experimental design |
| plot_nelder | Plot a Nelder Fan experimental design |
| plot_nelder_biculture_competition | Plot a diagnositc display of compeitition in a Nelder Fan... |
| remove_edge | Remove edge |
| run_ga | Run genetic algorithm |
| select_optimal | Select optimal individual |
| select_optimal_goelz | Select optimal Goelz Triangle design sfrom the results of... |
| select_optimal_nelder_biculture | Select optimal Biculture Nelder Fan designs from the results... |
| yard_to_feet_frac | Convert yards to feet with fractional inches |
