dotPscale: Version of hyperDot using p-value instead of number of...

In kewiechecki/moreComplexHeatmap: Additional functionality for the ComplexHeatmap package.

Version of hyperDot using p-value instead of number of replicates for dot size. accepts the results of an enrichment test applied to each cell in a matrix and writes a dotplot of the results

Description

Version of hyperDot using p-value instead of number of replicates for dot size. accepts the results of an enrichment test applied to each cell in a matrix and writes a dotplot of the results

Usage

dotPscale(
  odds,
  fdr,
  q,
  plim = 0.01,
  outl.name = "size",
  size.name = "-log10(FDR)",
  ...
)

Arguments

odds	A matrix of log2 odds ratios from an enrichment test.
fdr	A matrix of FDR values from an enrichment test.
q	A matrix of test counts for each test.
plim	Maximum p-value on the size scale. Values above plim are set to plim.
...	Additional arguments to hmdot().

kewiechecki/moreComplexHeatmap documentation built on June 8, 2025, 5:18 a.m.