hmdot: accepts the results of an enrichment test applied to each...

In kewiechecki/moreComplexHeatmap: Additional functionality for the ComplexHeatmap package.

accepts the results of an enrichment test applied to each cell in a matrix and writes a dotplot of the results

Description

accepts the results of an enrichment test applied to each cell in a matrix and writes a dotplot of the results

Usage

hmdot(
  mat,
  outl,
  size,
  col.mat,
  col.outl,
  scale,
  size.breaks,
  mat.name = "log2(OR)",
  outl.name = "-log10(FDR)",
  size.name = "size",
  file,
  path = ".",
  cell.dim = 0.15,
  width = 12,
  height = 12,
  append.date = F,
  ...
)

Arguments

mat	A matrix of values shown by the dot color.
outl	A matrix of values shown by the dot outlline.
size	A matrix of values shown by the dot size.
col.mat	A color scale for mat.
col.outl	A color scale for outlline.
scale	A vector of length 2 giving the min and max values to scale the size of the dots.
file	The outlput file name.
path	The outlput file path.
cell.dim	The width & height of each heatmap cell in inches.
width	The width of the outlput device in inches.
height	The height of the outlput device in inches.
...	Additional arguments to hm.cell().

kewiechecki/moreComplexHeatmap documentation built on June 8, 2025, 5:18 a.m.