getOverlaps: Finds all overlaps between one of the genomic features...
In kewiechecki/peakToGene: Functions to assign regulatory elements to genomic features.
getOverlaps R Documentation
Finds all overlaps between one of the genomic features returned bygetFeatures() and a set of peaks, then returns a table of gene-to-peak associations.
Description
Finds all overlaps between one of the genomic features returned bygetFeatures() and a set of peaks, then returns a table of gene-to-peak associations.
Usage
getOverlaps(feat, peaks)
Arguments
feat
One of the GRangesLists returned by getFeatures()
peaks
A GRanges object from the same genome as feat. It should have a names() attribute from namePeaks.
Value
A data.frame of gene-to-peak mappings.
kewiechecki/peakToGene documentation built on June 8, 2025, 5:18 a.m.
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| getOverlaps | R Documentation |
Finds all overlaps between one of the genomic features returned bygetFeatures() and a set of peaks, then returns a table of gene-to-peak associations.
Description
Finds all overlaps between one of the genomic features returned bygetFeatures() and a set of peaks, then returns a table of gene-to-peak associations.
Usage
getOverlaps(feat, peaks)
Arguments
feat |
One of the |
peaks |
A |
Value
A data.frame of gene-to-peak mappings.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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