phenograph_data: CyTOF data from 6,000 healthy immune cells from a single...

In keyes-timothy/tidytof: Analyze High-dimensional Cytometry Data Using Tidy Data Principles

CyTOF data from 6,000 healthy immune cells from a single patient.

Description

A dataset containing CyTOF measurements from healthy control cells originally studied in the following paper:

Levine JH, Simonds EF, et al. Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis. Cell. 2015 Jul 2;162(1):184-97. doi: 10.1016/j.cell.2015.05.047. Epub 2015 Jun 18. PMID: 26095251; PMCID: PMC4508757.

Usage

data(phenograph_data)

Format

A data frame with 6000 rows and 26 variables:

sample_name

Name of the sample from which the data was read

phenograph_cluster

Numeric ID of the cluster assignment of each row

cd19

A CyTOF measurement in raw ion counts

cd11b

A CyTOF measurement in raw ion counts

cd34

A CyTOF measurement in raw ion counts

cd45

A CyTOF measurement in raw ion counts

cd123

A CyTOF measurement in raw ion counts

cd33

A CyTOF measurement in raw ion counts

cd47

A CyTOF measurement in raw ion counts

cd7

A CyTOF measurement in raw ion counts

cd44

A CyTOF measurement in raw ion counts

cd38

A CyTOF measurement in raw ion counts

cd3

A CyTOF measurement in raw ion counts

cd117

A CyTOF measurement in raw ion counts

cd64

A CyTOF measurement in raw ion counts

cd41

A CyTOF measurement in raw ion counts

pstat3

A CyTOF measurement in raw ion counts

pstat5

A CyTOF measurement in raw ion counts

pampk

A CyTOF measurement in raw ion counts

p4ebp1

A CyTOF measurement in raw ion counts

ps6

A CyTOF measurement in raw ion counts

pcreb

A CyTOF measurement in raw ion counts

pzap70-syk

A CyTOF measurement in raw ion counts

prb

A CyTOF measurement in raw ion counts

perk1-2

A CyTOF measurement in raw ion counts

Details

2000 cells from 3 clusters identified in the original paper have been sampled.

Value

A data.frame

Source

https://cytobank.org/nolanlab/reports/Levine2015.html

keyes-timothy/tidytof documentation built on March 31, 2024, 12:01 p.m.