Man pages for kg737/INDEED_Patch
Integrated Differential Expression and Differential Network Analysis (INDEED)
| choose_rho | Generating a list of errors and their corresponding log(rho)... |
| color.bar | Color Bar |
| compute_cor | Compute the correlation |
| compute_dns | Calculate the differential network score |
| compute_par | Compute the partial correlation |
| INDEED | INDEED: A package for biomarker candidate prioritization. |
| loglik_ave | Create log likelihood error function |
| Met_Group_GU | Group label. |
| Met_GU | GU CIRR and GU HCC combined. |
| Met_name_GU | KEGG ID |
| network_display | Non-Interactive Network Visualization for INDEED Partial and... |
| networkVis | Interactive Network Visualization for INDEED Partial and... |
| non_partial_cor | Non-partial correlaton analysis |
| partial_cor | Partial correlaton analysis |
| permutation_cor | Permutations to build a differential network using... |
| permutation_pc | Permutations to build differential network using partial... |
| permutation_thres | Calculate the positive and negative threshold based on the... |
| pvalue_logit | Obtain p-values using logistic regression |
| pvalue_M_GU | P-values obtained by differential expression (DE) analysis. |
| scale_range | Scale list of numbers |
| select_rho_partial | Data preprocessing for partial correlaton analysis |
