Description Usage Arguments Value
Filter data frame so all samples selected by 'index' have read support greater than the boundary threshold, or 0
1 | apply_boundaries(df, boundaries, index, lower_grace = 0, upper_grace = 0)
|
df |
A dataframe |
boundaries |
Estimated boundaries from estimated_boundaries |
index |
Columns of df to examine |
lower_grace |
A 'grace' number of reads: below this many reads an SV is considered absent |
upper_grace |
A 'grace' number of reads: if an SV is this many reads below the boundary, it still counts as present |
Filtered dataframe
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