apply_boundaries: Filter data frame so all samples selected by 'index' have...
In kgori/svfiltr: Filter BRASS Structural Variants
Description
Usage
Arguments
Value
Description
Filter data frame so all samples selected by 'index' have read support
greater than the boundary threshold, or 0
Usage
1
apply_boundaries(df, boundaries, index, lower_grace = 0, upper_grace = 0)
Arguments
df
A dataframe
boundaries
Estimated boundaries from estimated_boundaries
index
Columns of df to examine
lower_grace
A 'grace' number of reads: below this many reads an SV is considered absent
upper_grace
A 'grace' number of reads: if an SV is this many reads below the boundary, it still counts as present
Value
Filtered dataframe
kgori/svfiltr documentation built on May 20, 2019, 9:21 a.m.
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Description Usage Arguments Value
Description
Filter data frame so all samples selected by 'index' have read support greater than the boundary threshold, or 0
Usage
1 | apply_boundaries(df, boundaries, index, lower_grace = 0, upper_grace = 0)
|
Arguments
df |
A dataframe |
boundaries |
Estimated boundaries from estimated_boundaries |
index |
Columns of df to examine |
lower_grace |
A 'grace' number of reads: below this many reads an SV is considered absent |
upper_grace |
A 'grace' number of reads: if an SV is this many reads below the boundary, it still counts as present |
Value
Filtered dataframe
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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