getAccessions: Getting Accession Data from ICARDA's Genebank Documentation...

In khadijaaziz/icardaFIGSr: Subsetting using Focused Identification of the Germplasm Strategy (FIGS)

Description

Return a data frame with accession data for the specified crop.

Usage

getAccessions(
  crop = "",
  ori = NULL,
  IG = "",
  doi = FALSE,
  taxon = FALSE,
  collectionYear = FALSE,
  coor = FALSE,
  available = FALSE
)

Arguments

crop	character. Crop for which to get accession data. See section 'Details' for available crops or use getCrops function. Default: "".
ori	string. Country of origin using the ISO 3166-1 alpha-3 country codes. Default: NULL.
IG	integer. Unique identifier of accession. Default: "".
doi	boolean. If TRUE , the function will return the digital object identifiers DOI for the accessions. Default: FALSE.
taxon	boolean. If TRUE, the function will return the taxon information of the accessions. Default: FALSE.
collectionYear	boolean. If TRUE, the function will return the year of the collecting mission. Default: FALSE.
coor	boolean. If TRUE, returns only georeferenced accessions containing longitude and latitude. Default: FALSE.
available	boolean. If TRUE, returns the availability of accessions for distribution, Default: FALSE.

Details

Types of crops available include:

• 'Aegilops'

• 'Barley'

• 'Bread wheat'

• 'Chickpea'

• 'Durum wheat'

• 'Faba bean'

• 'Faba bean BPL'

• 'Forage and range'

• 'Lathyrus'

• 'Lentil'

• 'Medicago annual'

• 'Not mandate cereals'

• 'Pisum'

• 'Primitive wheat'

• 'Trifolium'

• 'Vicia'

• 'Wheat hybrids'

• 'Wheat wild relatives'

• 'Wild Cicer'

• 'Wild Hordeum'

• 'Wild Lens'

• 'Wild Triticum'

Alternatively, the list of available crops can be fetched from ICARDA's online server using getCrops.

Value

A data frame with accession passport data for specified crop in crop from the locations in ori.

Author(s)

Khadija Aouzal, Amal Ibnelhobyb, Zakaria Kehel, Fawzy Nawar

Examples

## Not run: 
if(interactive()){
 # Obtain accession data for durum wheat
 durum <- getAccessions(crop = 'Durum wheat', coor = TRUE)
 }

## End(Not run)

khadijaaziz/icardaFIGSr documentation built on Dec. 21, 2021, 6:38 a.m.