stableTreeClusters: Determine number of detectable clusters given a reference...

In kharchenkolab/conos: Clustering on Network of Samples

Determine number of detectable clusters given a reference walktrap and a bunch of permuted walktraps

Description

Determine number of detectable clusters given a reference walktrap and a bunch of permuted walktraps

Usage

stableTreeClusters(
  refwt,
  tests,
  min.threshold = 0.8,
  min.size = 10,
  n.cores = 30,
  average.thresholds = FALSE
)

Arguments

refwt	reference walktrap result
tests	a list of permuted walktrap results
min.threshold	numeric Min detectability threshold (default=0.8)
min.size	numeric Minimum cluster size (number of leafs) (default=10)
n.cores	numeric Number of cores (default=30)
average.thresholds	boolean Report a single number of detectable clusters for averaged detected thresholds (default=FALSE) (a list of detected clusters for each element of the tests list is returned by default)

Value

number of detectable stable clusters

kharchenkolab/conos documentation built on Feb. 28, 2024, 6:03 a.m.