Man pages for khazum/ccImpute
ccImpute: an accurate and scalable consensus clustering based approach to
impute dropout events in the single-cell RNA-seq data
(https://doi.org/10.1186/s12859-022-04814-8)
| ccImpute | Impute Dropout Values in Single-Cell RNA Sequencing Data |
| colRanks_fast | Computes rankings for each column of a matrix in parallel. |
| computeDropouts | Impute Dropout Values in a Log-normalized Expression Count... |
| cor_fast | Computes a Pearson |
| doSVD | Perform Truncated Singular Value Decomposition (SVD) |
| estkTW | Estimate the Number of Clusters (k) Using the Tracy-Widom... |
| findDropouts | Identify Dropout Events in Single-Cell Expression Data |
| getConsMtx | This function calculates an average consensus matrix from a... |
| getCorM | Calculate Column-wise Correlation Matrix |
| getScale | Computes Means and Standard Deviations for Scaling |
| printer | Internal Printing Utility |
| rowVars_fast | Computes Row Variances Efficiently |
| runKM | Perform Consensus K-Means Clustering |
| solver | Computes imputed expression matrix using linear eq solver |
| solver2 | Fast Calculation of "Dropout" values |
| sparseColRanks_fast | Computes rankings for each column of a matrix in parallel. |
| sparseSolver2 | Fast Calculation of "Dropout" values |
| wCor_fast | Computes a Weighted Pearson |
