CHANGELOG.md

In kholsinger/Hickory: Analysis of within-population inbreeding and population differentiation

26 December

• Added vignettes for locus- and population-specific effects and for dominant markers.

15 November

• Added outlier detection. NOTE: The approach used is different from the one described in Guo et al. It uses posterior comparison of individual effects to overall effects, taking advantage of the new parameterization.

8 November 2018

• Added estimates of locus- and population-specific effects on theta. NOTE: The parameterization is different from the one used in Guo et al. Journal of the American Statistical Association 104:142-154; 2009.

18 October 2020

• Added estimate of within-population inbreeding coefficient by locus and population. NOTE: Each population locus combination is analyzed independently.

• Included summary of within-population inbreeding coefficient analysis to identify locus/population combinations in which the estimated credible interval (95% by default) for the within-population inbreeding coefficient does not include 0.

• Updated Roadmap. Defer investigation of dominant markers until after other tasks are complete.

11 October 2020

• Added vignette illustrating data format and analysis of data.

• is implemented.

3 October 2020

• is implemented along with leave-one-out cross validation for model comparison.

kholsinger/Hickory documentation built on Jan. 9, 2022, 6:30 p.m.