plot: Plot methods for 'spatPomp' objects

In kidusasfaw/spatPomp: Inference for Spatiotemporal Partially Observed Markov Processes

Plot methods for spatPomp objects

Description

Visualize data in a spatPomp object or a derived class. This gives a quick view; the data can be extracted from the object to make a customized plot.

Usage

## S4 method for signature 'spatPomp'
plot(x, type = c("l", "h"), log = FALSE, plot_unit_names = TRUE, ...)

## S4 method for signature 'igirfd_spatPomp'
plot(x, params = names(coef(x)), ncol = 3)

Arguments

x	a spatPomp object
type	for visualizing an object of class spatPomp, the user can obtain a grid of line plots by default (l) or a heat map by supplying argument h.
log	should the data be transformed to log10(x+1) before plotting? This helps in contexts where there are spikes that could take away attention from the dynamics illustrated by the rest of the data.
plot_unit_names	allows suppression of unit names when making a heat map for a large number of units
...	for visualizing an object of class spatPomp, the user can add arguments like nrow to specify the number of rows in the grid.
params	allows selection of a subset of parameters when making a diagnostic plot for a model with many parameters
ncol	the number of columns in the grid plot

Value

a ggplot plot of class ‘gg’ and ‘ggplot’.

kidusasfaw/spatPomp documentation built on Oct. 31, 2024, 8:05 a.m.