| AdjustCovtests | Clean up and bonferroni adjust multiple 'covTest' results |
| BindSPE | Bind multiple sample data together |
| clusterClass | Clusters cells into different classes using PCA-Gaussian... |
| ConstructSampleFactors | Construct model matrix for integrating multiple samples |
| findid-methods | Find the cell class with the highest/lowest average channel |
| FindOverlap | Given a list of two pathway results, find the overlap between... |
| general-lassosig-methods | Call 'LassoSig' for multiple response variables |
| lassosig-methods | High dimensional significance test for LASSO using the... |
| lmNormalize | Provides column by column normalisation on Y given cell size... |
| NormalizeSP | Normalization of an 'SPData' object |
| TotalProteinNormalize | Uses lm normalisation to normalize by cell concentration |
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