kieranrcampbell/clonealign: Assigning scRNA-seq to clone-of-origin using copy number from ultra-low-depth scDNA-seq

clonealign assigns single-cell RNA-seq to clones of origin based on copy number data. This is useful when single-cell RNA-seq and DNA-seq are measured (separately) on the same set of cells, clones are inferred based on copy number profiles of the scDNA-seq, and the expression profile of each clone is desired.

Getting started

Package details

Bioconductor views GeneExpression RNASeq SingleCell Software Transcriptomics
LicenseApache License (== 2.0) | file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
kieranrcampbell/clonealign documentation built on Dec. 18, 2020, 3:49 a.m.