Files in kieranrcampbell/clonealign
Assigning scRNA-seq to clone-of-origin using copy number from ultra-low-depth scDNA-seq
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/allele-specific.R
R/clonealign.R
R/inference-tflow.R
R/plotting.R
R/preprocess.R
README.md
data/df_cnv.rda
data/example_clonealign_fit.rda
data/example_sce.rda
docs/index.html
docs/introduction_to_clonealign.html
docs/preparing_copy_number_data.html
inst/clonealign_figure.png
inst/create_model3_synthetic.R
man/clone_assignment.Rd
man/clonealign.Rd
man/compute_ca_fit_mse.Rd
man/compute_correlations.Rd
man/construct_ai_likelihood.Rd
man/df_cnv.Rd
man/example_clonealign_fit.Rd
man/example_sce.Rd
man/get_outlying_genes.Rd
man/inference_tflow.Rd
man/plot_clonealign.Rd
man/preprocess_for_clonealign.Rd
man/print.clonealign_fit.Rd
man/process_cnv_data.Rd
man/process_gene_expression_data.Rd
man/recompute_clone_assignment.Rd
man/round2.Rd
man/run_clonealign.Rd
man/saturate.Rd
tests/testthat.R
tests/testthat/test_clonealign.R
vignettes/bibliography.bib
vignettes/clonealign_figure.png
vignettes/introduction_to_clonealign.Rmd
vignettes/preparing_copy_number_data.Rmd
