API for kieranrcampbell/clonealign
Assigning scRNA-seq to clone-of-origin using copy number from ultra-low-depth scDNA-seq
| Global functions | |
|---|---|
| .onLoad | Source code |
| beta_binomial_log_prob | Source code |
| clone_assignment | Man page Source code |
| clonealign | Man page Source code |
| compute_ca_fit_mse | Man page Source code |
| compute_correlations | Man page Source code |
| construct_ai_likelihood | Man page Source code |
| df_cnv | Man page |
| example_clonealign_fit | Man page |
| example_sce | Man page |
| get_next_seed | Source code |
| get_outlying_genes | Man page Source code |
| inference_tflow | Man page Source code |
| inverse_softplus | Source code |
| plot_clonealign | Man page Source code |
| preprocess_for_clonealign | Man page Source code |
| print.clonealign_fit | Man page Source code |
| process_cnv_data | Man page Source code |
| process_gene_expression_data | Man page Source code |
| recompute_clone_assignment | Man page Source code |
| round2 | Man page Source code |
| run_clonealign | Man page Source code |
| safe_inverse_softplus | Source code |
| sanitize_allele_info | Source code |
| saturate | Man page Source code |
| softplus | Source code |
