Man pages for kieranrcampbell/pseudogp
Probabilistic pseudotime for single-cell RNA-seq
| fitPseudotime | Fit probabilistic pseudotime model |
| le_fit | Stan fit for laplacian eigenmaps representation of monocle |
| monocle_le | Laplacian eigenmaps representation of monocle data |
| monocle_pca | PCA representation of monocle data |
| monocle_tsne | t-SNE representation of monocle data |
| plotDiagnostic | Plot MCMC diagnostics. |
| posteriorBoxplot | Posterior boxplot ordered by pseudotime |
| posteriorCurvePlot | Posterior curve plot. |
| posterior_mean_curve | Compute the posterior mean curve |
| standardize | Column-wise standardize input data to mean 0 and variance 1 |
