fitPseudotime | Fit probabilistic pseudotime model |
le_fit | Stan fit for laplacian eigenmaps representation of monocle |
monocle_le | Laplacian eigenmaps representation of monocle data |
monocle_pca | PCA representation of monocle data |
monocle_tsne | t-SNE representation of monocle data |
plotDiagnostic | Plot MCMC diagnostics. |
posteriorBoxplot | Posterior boxplot ordered by pseudotime |
posteriorCurvePlot | Posterior curve plot. |
posterior_mean_curve | Compute the posterior mean curve |
standardize | Column-wise standardize input data to mean 0 and variance 1 |
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