plotDiagnostic: Plot MCMC diagnostics.
In kieranrcampbell/pseudogp: Probabilistic pseudotime for single-cell RNA-seq
Description
Usage
Arguments
Details
Value
Description
Plot basic MCMC diagnostics (traceplot and autocorrelation) of the log-posterior probability
for a stanfit object.
Usage
1
plotDiagnostic(fit, arrange = c("vertical", "horizontal"))
Arguments
fit
A stanfit object
arrange
How to arrange the plots. If "vertical", traceplot and autocorrelation are
arranged in one column, while if "horizontal" traceplot and autocorrelation are arranged
in one row.
Details
Further assessment of convergence can be done using rstan functions.
Value
A ggplot2 object
kieranrcampbell/pseudogp documentation built on May 20, 2019, 9:24 a.m.
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Description Usage Arguments Details Value
Description
Plot basic MCMC diagnostics (traceplot and autocorrelation) of the log-posterior probability
for a stanfit object.
Usage
1 | plotDiagnostic(fit, arrange = c("vertical", "horizontal"))
|
Arguments
fit |
A |
arrange |
How to arrange the plots. If "vertical", traceplot and autocorrelation are arranged in one column, while if "horizontal" traceplot and autocorrelation are arranged in one row. |
Details
Further assessment of convergence can be done using rstan functions.
Value
A ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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