sanitise_inputs: Sanitise inputs

In kieranrcampbell/switchde: Switch-like differential expression across single-cell trajectories

Description

Sanitise inputs

Usage

sanitise_inputs(object, pseudotime, lower_threshold, zero_inflated, sce_assay)

Arguments

object	The object passed at the entry point (either a SCESet or gene expression matrix)
pseudotime	A pseudotime vector
lower_threshold	The minimum threshold below which to set expression to zero to avoid numerical issues. Default is 0.01
zero_inflated	Logical. Should zero inflation be implemented? Default FALSE
sce_assay	The assay from the SingleCellExperiment to be used as expression, defaulting to "exprs"

Value

A list with two entries: a gene expression matrix X and a pseudotime vector pst.

kieranrcampbell/switchde documentation built on May 20, 2019, 9:40 a.m.