switchplot: Plot gene behaviour

Description Usage Arguments Details Value Examples

Description

Plot gene behaviour and MLE sigmoid as a function of pseudotime.

Usage

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switchplot(x, pseudotime, pars)

Arguments

x

Gene expression vector

pseudotime

Pseudotime vector (of same length as x)

pars

Fitted model parameters

Details

This plots expression of a single gene. Fitted model parameters can either be specified manually or can be extracted from the data.frame returned by switchde using the function extract_pars.

Value

A ggplot2 plot of gene expression and MLE sigmoid

Examples

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kieranrcampbell/switchde documentation built on May 20, 2019, 9:40 a.m.