Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...
Package details |
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Author | Gregory Warnes, with contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man. |
Bioconductor views | Genetics |
Maintainer | Gregory Warnes <greg@warnes.net> |
License | GPL |
Version | 1.3.8 |
Package repository | View on GitHub |
Installation |
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