Coordinate_Covnerter1: Coordinate Converter 1

In kingyang728/genomicCoordinateConverter: Coordinate Converter

Description

This function take genomic location, nucleotide exchange as input and convert these to a dataframe which contains HUGO Symbol, transcript ID, position in primary transcript, exchanged amino acid.

Usage

Coordinate_Covnerter1(
  chromosome,
  genomic_start,
  genomic_end,
  refAllele,
  varAllele,
  strand
)

Arguments

chromosome	sequence name like "chrX"
genomic_start	genomic start position
genomic_end	genomic end position
refAllele	reference allele
varAllele	variant allele
strand	sequence strand "+" or "-"

Value

dataframe which contians corresponding HUGO Symbol, transcript ID, position in primary transcript, exchanged amino acid.

Examples

DF1 <- Coordinate_Covnerter1("chrX",48823056,48823056,"G","C")

kingyang728/genomicCoordinateConverter documentation built on June 29, 2020, 4:05 a.m.