Description Usage Arguments Value Examples
View source: R/Coordinate_Converter.R
This function take genomic location, nucleotide exchange as input and convert these to a dataframe which contains HUGO Symbol, transcript ID, position in primary transcript, exchanged amino acid.
1 2 3 4 5 6 7 8 | Coordinate_Covnerter1(
chromosome,
genomic_start,
genomic_end,
refAllele,
varAllele,
strand
)
|
chromosome |
sequence name like "chrX" |
genomic_start |
genomic start position |
genomic_end |
genomic end position |
refAllele |
reference allele |
varAllele |
variant allele |
strand |
sequence strand "+" or "-" |
dataframe which contians corresponding HUGO Symbol, transcript ID, position in primary transcript, exchanged amino acid.
1 | DF1 <- Coordinate_Covnerter1("chrX",48823056,48823056,"G","C")
|
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