| CDSeq | Complete deconvolution using sequencing data. |
| cdseq.result | Output of synthetic mixtures of PBMC scRNAseq data |
| CDSeq-R-package | CDSeq: A package for complete deconvolution using sequencing... |
| Cell2RNA | Cell proportion to RNA proportion 'Cell2RNA' converts Cell... |
| cellTypeAssignSCRNA | 'cellTypeAssignSCRNA' assigns CDSeq-identified cell types... |
| gene2rpkm | gene2rpkm outputs the rpkm normalizations of the... |
| gene_length | Gene length |
| gibbsSampler | This is the Gibbs sampler for CDSeq. 'GibbsSampler' returns... |
| hungarian_Rcpp | This is the Hungarian algorithm wrapper for cell type... |
| intersection | 'intersection' take intersection of multiple lists and return... |
| logpost | logpost computes the log posterior of the CDSeq model.... |
| max_rep | 'max_rep' Find the element that repeats the most in a given... |
| merge_df | Data frame for keeping the CDSeq-estimated cell type... |
| mixtureGEP | Synthetic bulk RNA-seq read counts data of six cell types |
| pbmc_ggplot | ggplot figures of comparison between CDSeq-estimated cell... |
| pbmc_mix | Synthetic bulk RNA-seq read counts data of PBMC single cell... |
| read2gene | read2gene outputs the GEP normalized by gene length of the... |
| refGEP | GEPs of six component pure cell lines |
| result1 | CDSeq result of synthetic bulk RNA-seq read counts data of... |
| result2 | CDSeq result of synthetic bulk RNA-seq read counts data of... |
| result3 | CDSeq result of synthetic bulk RNA-seq read counts data of... |
| RNA2Cell | RNA proportion to cell proportion 'RNA2Cell' converts RNA... |
| sc_annotation | Cell type annotation of the PBMC single cell data |
| sc_gep | PBMC single cell RNAseq read counts that used for creating... |
| seedMT | This is the Mersenne Twister random number generator. 'cokus'... |
| SyntheticMixtureData | Synthetic bulk RNA-seq read counts data of six cell types,... |
| true_GEP_gene | True GEPs of the six component cell types normalized by gene... |
| true_GEP_read | True GEPs of the six component cell types unnormalized by... |
| true_GEP_rpkm | True GEPs of the six component cell types RPKM normalization |
| true_prop | True cell type proportion in the PBMC synthetic mixtures |
| true_prop_cell | True cell proportions of the mixtures |
| true_prop_RNA | True cell type RNA proportions |
