kkdey/CountClust: Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models

Fits grade of membership models (GoM, also known as admixture models) to cluster RNA-seq gene expression count data, identifies characteristic genes driving cluster memberships, and provides a visual summary of the cluster memberships.

Getting started

Package details

Bioconductor views Clustering GeneExpression RNASeq Sequencing Software StatisticalMethod Visualization
MaintainerKushal Dey <[email protected]>
LicenseGPL (>= 2)
Version1.6.2
URL https://github.com/kkdey/CountClust
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("kkdey/CountClust")
kkdey/CountClust documentation built on Nov. 12, 2018, 3:27 p.m.