Files in kkdey/CountClust
Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models
.Rbuildignore
.gitignore
CountClust.Rproj
DESCRIPTION
NAMESPACE
NEWS
R/BatchCorrectedCounts.R
R/ExtractHighCorFeatures 2.R
R/ExtractHighCorFeatures.R
R/ExtractTopFeatures.R
R/FitGoM.R
R/FitGoMpool.R
R/RemoveSparseFeatures.R
R/StructureGGplot.R
R/StructurePie.R
R/compGoM.R
R/compare_omega.R
R/data.R
R/handleNA.R
R/nullmodel_GoM.R
README.md
data/.DS_Store
data/AbundanceGoM.rda
data/GTExV6Brain.FitGoM.rda
data/MouseDeng2014.FitGoM.rda
data/MouseJaitinSpleen.FitGoM.rda
data/datalist
data/ex.counts.rda
deng_structure_pie.png
inst/CITATION
man/AbundanceGoM.Rd
man/BatchCorrectedCounts.Rd
man/ExtractHighCorFeatures.Rd
man/ExtractTopFeatures.Rd
man/FitGoM.Rd
man/FitGoMpool.Rd
man/GTExV6Brain.FitGoM.Rd
man/MouseDeng2014.FitGoM.Rd
man/MouseJaitinSpleen.FitGoM.Rd
man/RemoveSparseFeatures.Rd
man/StructureGGplot.Rd
man/StructurePie.Rd
man/compGoM.Rd
man/compare_omega.Rd
man/ex.counts.Rd
man/handleNA.Rd
man/nullmodel_GoM.Rd
vignettes/.build.timestamp
vignettes/compgom_test.R
vignettes/count-clust.R
vignettes/count-clust.Rmd
vignettes/count-clust.html
vignettes/countclust.bib
vignettes/figures/gtex_annot-1.png
vignettes/figures/plot_topic-1.png
vignettes/figures/plot_topic_2-1.png
vignettes/figures/plot_topic_deng-1.png
vignettes/figures/plot_topic_gtex-1.png
vignettes/structure_pie_pca.png
vignettes/structure_pie_tsne.png
vignettes/structure_plot.png
vignettes/test 2/countsclust.R
vignettes/test 2/data_prepare.R
vignettes/test 2/polarHistogramStructure.R
vignettes/test 2/test_code.R
vignettes/test 2/test_code_2.R
vignettes/test 2/test_code_3.R
vignettes/test 2/test_code_4.R
vignettes/test 2/test_code_5.R
vignettes/test/.DS_Store
vignettes/test/countsclust.R
vignettes/test/data_prepare.R
vignettes/test/metadata_brain.txt
vignettes/test/polarHistogramStructure.R
vignettes/test/samples_id.txt
vignettes/test/structure_plot.pdf
vignettes/test/structure_plot.png
vignettes/test/test_code.R
vignettes/test/test_code_2.R
vignettes/test/test_code_3.R
vignettes/test/test_code_4.R
vignettes/test/test_code_5.R
