TODO.md

In kkeenan02/diveRsity: A Comprehensive, General Purpose Population Genetics Analysis Package

TODO

This file lists developments still to be carried out for the diveRsity package.

1. Speed-up allelic richness and $F_{IS}$ calculations in divBasic
2. Tidy up HWE legacy code in divBasic
3. Re-write divBasic on top of rgp type functions.
4. Allow output from gpSampler to be held in memory rather than to be written to file. This allows speedup since other functions like diffCalc will not need to read a file from disk.
5. segfault: memory not mapped for large SNP data. Cause seems to be glbWCcpp
6. Make sure that all relevant functions return data frames rather than matrices.
7. Add a warning to diffCalc when users specify pairwise = TRUE or bs_pairwise = TRUE, when there are only two pops in the input file.
8. Implement a plink to genepop function.
9. Fix directory bug in snp2gen function

kkeenan02/diveRsity documentation built on May 20, 2019, 10:43 a.m.