slices.default: Plot neuroimaging slices in three planes

In kkholst/neurocdf: Various utilities for handling neuroimaging data

Description

Plot neuroimaging slices in three planes

Usage

  ## Default S3 method:
 slices(object, olay = NULL,
    rlim1 = c(-Inf, Inf), rlim2 = NULL,
    col1 = gray.colors(255),
    col2 = rev(rainbow(15, start = 0, end = 0.69)),
    center = 1, rev.col2 = FALSE, center.global = TRUE,
    main = "Three Planes View", scale = 0.8, alpha = 0.5,
    cross = TRUE,
    layout = c("clockwise", "counterclockwise"),
    origin = c(45, 63, 36), voxelsize = c(2, 2, 2), start,
    var = "GlobalImage", id = 1, digits = 4, ...)

Arguments

object	Volume
olay	Overlay (optional)
rlim1	Limits of voxel-values to plot of volume
rlim2	Limits of voxel-values to plot of overlay
col1	Color of volume voxels
col2	Color of overlay voxels
center	Choice of color scale. 0: color range from 0 to maximum value; 1: color range minimum to maximum value; 2: color range symmetric: (-1;1)*(signed maximum value); or a vector with the min and max value.
rev.col2	Reverse col2
center.global	color ramge from slice or volume
main	Main label
scale	scale
alpha	transparency
cross	if TRUE a cross is plotted at active voxel
layout	Layout
origin	origin (conversion to real-world coordinates)
voxelsize	voxel-size (conversion to real-world coordinates)
start	Start at voxel
var	Variable in neuro netCDF file
id	Image number in 'Variable'
digits	number of digits to show in legend
...	Additional arguments to lower level arguments

Details

Wrapper of misc3d::slices3d

kkholst/neurocdf documentation built on May 20, 2019, 10:59 a.m.