export.csvs: Exports a seurat object as CSV files

In klprint/customSC: Custom functions for single cell transcriptomics analysis

Description

This function creates a CSV file for:

Usage

export.csvs(obj, folderpath, sample.name = "seurat",
  alter.gene.names.df = NULL, alter.gene.names.from = "Gene.stable.ID",
  alter.gene.names.to = "Gene.name", min.cells = 10)

Arguments

obj	Seurat object
folderpath	Folder to export to. If not existent, it will be created.
sample.name	Prefix for each exported CSV
alter.gene.names.from	Column name of the alter.gene.names dataframe which corresponds to the row.names in the data and raw.data slot of the seurat object
alter.gene.names.to	Column name which contains the new gene names in the alter.gene.names dataframe
alter.gene.names	Dataframe to convert the names of the Genes.

Details

- the data field - the raw.data field - the UMAP embedding

klprint/customSC documentation built on May 28, 2019, 5:54 p.m.