nrevss: CDC WHO NREVSS Laboratory Data
In kmcconeghy/flumodelr: An R Package for Estimating Attributable Influenza Morbidity and Mortality
Description
Usage
Format
Details
Source
Description
Description from CDC Flu Portal Dashboard:
Virologic Surveillance — Approximately 110 U.S. World Health Organization (WHO)
Collaborating Laboratories and 270 National Respiratory and Enteric Virus
Surveillance System (NREVSS) laboratories, which include both public health
and clinical laboratories, located throughout the United States participate
in virologic surveillance for influenza. All public health and clinical
laboratories report the total number of respiratory specimens tested
and the number positive for influenza each week to CDC, along with age
or age group of the person, if available. Beginning in the 2015-16 season,
reports from public health and clinical laboratories were presented separately
in the weekly influenza update, FluView. Data from clinical laboratories
include the weekly total number of specimens tested, the number of positive
influenza tests, and the percent positive by influenza type.
Data presented from public health laboratories include the weekly
total number of specimens tested, the number of positive influenza tests,
and the number by influenza virus type, influenza A subtype, and
influenza B lineage. In addition, the age group distribution of
influenza positive tests are also summarized in Fluview. A subset of
the influenza viruses collected by public health laboratories are sent to
CDC for further characterization, including antiviral resistance
testing and antigenic and/or genetic characterization, and this
information is presented in the antiviral resistance and
virus characterization sections of the FluView report.
Usage
1
Format
A data frame with 14094 rows and 12 variables:
- state
Proper name for U.S. State, character string
- year
observation year, integer
- week
observation week, integer
- spec_tot
Total specimens tested
- spec_pos
Total specimens positive for Influenza
- type_A_
Each column represents specimens positive for that type/subtype
...
Details
Some variables renamed from original file for parsimony.
Source
https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html
kmcconeghy/flumodelr documentation built on June 7, 2019, 8:47 p.m.
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Description Usage Format Details Source
Description
Description from CDC Flu Portal Dashboard: Virologic Surveillance — Approximately 110 U.S. World Health Organization (WHO) Collaborating Laboratories and 270 National Respiratory and Enteric Virus Surveillance System (NREVSS) laboratories, which include both public health and clinical laboratories, located throughout the United States participate in virologic surveillance for influenza. All public health and clinical laboratories report the total number of respiratory specimens tested and the number positive for influenza each week to CDC, along with age or age group of the person, if available. Beginning in the 2015-16 season, reports from public health and clinical laboratories were presented separately in the weekly influenza update, FluView. Data from clinical laboratories include the weekly total number of specimens tested, the number of positive influenza tests, and the percent positive by influenza type. Data presented from public health laboratories include the weekly total number of specimens tested, the number of positive influenza tests, and the number by influenza virus type, influenza A subtype, and influenza B lineage. In addition, the age group distribution of influenza positive tests are also summarized in Fluview. A subset of the influenza viruses collected by public health laboratories are sent to CDC for further characterization, including antiviral resistance testing and antigenic and/or genetic characterization, and this information is presented in the antiviral resistance and virus characterization sections of the FluView report.
Usage
1 |
Format
A data frame with 14094 rows and 12 variables:
- state
Proper name for U.S. State, character string
- year
observation year, integer
- week
observation week, integer
- spec_tot
Total specimens tested
- spec_pos
Total specimens positive for Influenza
- type_A_
Each column represents specimens positive for that type/subtype
...
Details
Some variables renamed from original file for parsimony.
Source
https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html
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