Man pages for kmuench/DESeqAid
DESeqAid: Kristin's favorite functions for her DESeq-based differential expression pipelines
| addHUGOnames | Add HUGO gene names to ensembl list |
| add_lfcShrink | Add LFC Shrink |
| checkSVs | Check Surrogate Variables |
| DE_heatmap | Plot differentially expressed genes with a heatmap |
| deseq_coef | You could just call DESeq() in your code... or you could call... |
| deseq_contrasts | Perform DESeq using contrasts |
| distPCA | PCA Plot |
| fcSortBarPlot_lfcShrink | The Theo Palmer Bar Plot ~for shrunken lfcs~ |
| heatmapSexGenes | Heatmap of Sex Marker Genes |
| makeVolcanoPlot | Make a volcano plot |
| plotPCA_pickPCs | Plot principal components analysis: DESeq2 method, but more... |
| sampSimilarityHeatmap | Examine sample similarity with heatmap |
| theoBarPlot | The Theo Palmer Bar Plot |
