checkSVs: Check Surrogate Variables
In kmuench/DESeqAid: DESeqAid: Kristin's favorite functions for her DESeq-based differential expression pipelines
Description
Usage
Arguments
Examples
Description
Do your surrogate variables correlate to any known sources of variance in your dataset?
This function will help you visualize that.
Usage
1
checkSVs(MyDESeqDataSetVar, mySVseq, nSurr)
Arguments
nSurr
number of surrogate variables contained within SVA package that you want to plot
myDESeqDataSetVar
Imported DESeq data, dollar sign, sampleTable name you want to plot
svseq
svseq object created with SVA package
Examples
1
checkSVs(myData$Sex, svseq, 3)
kmuench/DESeqAid documentation built on Oct. 14, 2020, 4:45 a.m.
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Description Usage Arguments Examples
Description
Do your surrogate variables correlate to any known sources of variance in your dataset? This function will help you visualize that.
Usage
1 | checkSVs(MyDESeqDataSetVar, mySVseq, nSurr)
|
Arguments
nSurr |
number of surrogate variables contained within SVA package that you want to plot |
myDESeqDataSetVar |
Imported DESeq data, dollar sign, sampleTable name you want to plot |
svseq |
svseq object created with SVA package |
Examples
1 | checkSVs(myData$Sex, svseq, 3)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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