addHUGOnames: Add HUGO gene names to ensembl list
In kmuench/DESeqAid: DESeqAid: Kristin's favorite functions for her DESeq-based differential expression pipelines
Description
Usage
Arguments
Details
Examples
Description
You could just call DESeq() in your code... or you could call this nifty function, which
also saves the output to a table AND an R variable for later use
Usage
1
addHUGOnames(my_df, whichEnsembl, transcript_or_gene)
Arguments
my_df
A data frame where rownames are ensembl genes
whichEnsembl
which biomart dataset to draw from - e.g. "mmusculus_gene_ensembl"
transcript_or_gene
"ensembl_gene_id" or "ensembl_transcript_id"
Details
Returns DESeq results object.
Examples
1
new_results_df <- addHUGOnames(my_results_df, "mmusculus_gene_ensembl", 'ensembl_transcript_id')
kmuench/DESeqAid documentation built on Oct. 14, 2020, 4:45 a.m.
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Description Usage Arguments Details Examples
Description
You could just call DESeq() in your code... or you could call this nifty function, which also saves the output to a table AND an R variable for later use
Usage
1 | addHUGOnames(my_df, whichEnsembl, transcript_or_gene)
|
Arguments
my_df |
A data frame where rownames are ensembl genes |
whichEnsembl |
which biomart dataset to draw from - e.g. "mmusculus_gene_ensembl" |
transcript_or_gene |
"ensembl_gene_id" or "ensembl_transcript_id" |
Details
Returns DESeq results object.
Examples
1 | new_results_df <- addHUGOnames(my_results_df, "mmusculus_gene_ensembl", 'ensembl_transcript_id')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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