coveRage: coveRage: A package for exploring coverage in high throughput...

In knausb/coveRage: Tools to Explore Sequencing Coverage in High-Throughput Sequencing Projects

Description

This package provides functions to process mpileup files created by samtools mpileup. This information can be used to explore copy number variants to help determine whether they are due to biological or technical issues. These data can then be used to censor genome analyses to focus on regions of base ploid.

File input and output functions

file_stats

read_matrix

write_matrix

Mpileup processing functions

bedify

baf_stats

baf_plot

Vignettes

Package vignettes can be listed with:

vignette(package='coveRage')

See Also

samtools documentation (and others).

knausb/coveRage documentation built on May 20, 2019, 12:52 p.m.