baf_summary: Summarize baf count tables
In knausb/coveRage: Tools to Explore Sequencing Coverage in High-Throughput Sequencing Projects
Description
Usage
Arguments
Details
Value
See Also
Description
Calculate summary statistics for count tables produced by baf_stats
Usage
1
baf_summary(counts, probs = c(0.025, 0.16, 0.5, 0.84, 0.975))
Arguments
counts
count table produced by baf_stats
probs
vector of probabilities to pass to quantile
Details
This function is intended to summarize count tables produced by baf_stats.
By default the mean, variance and five quantiles (0.025, 0.16, 0.5, 0.84, 0.975) are returned.
The quantiles are generated by the function quantile and may be changed by changing the option probs.
Value
a vector of size two plus the number of quantiles requested.
See Also
baf_stats, quantile
knausb/coveRage documentation built on May 20, 2019, 12:52 p.m.
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Description Usage Arguments Details Value See Also
Description
Calculate summary statistics for count tables produced by baf_stats
Usage
1 | baf_summary(counts, probs = c(0.025, 0.16, 0.5, 0.84, 0.975))
|
Arguments
counts |
count table produced by baf_stats |
probs |
vector of probabilities to pass to quantile |
Details
This function is intended to summarize count tables produced by baf_stats. By default the mean, variance and five quantiles (0.025, 0.16, 0.5, 0.84, 0.975) are returned. The quantiles are generated by the function quantile and may be changed by changing the option probs.
Value
a vector of size two plus the number of quantiles requested.
See Also
baf_stats, quantile
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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