setupLnbDict: setupLnbDict

In kojikoji/nbcf: Change point detection for time course multi negative binomial observation

Description

Set up LnbDict instance

Usage

setupLnbDict(count.max, mean.bias.vec, r, alpha, beta, count.res, p.res)

Arguments

count.max	dgCMatrix, Max values of count.mat in link{Nbcd}
mean.bias.vec	Numeric vecotor, Relative mean bias for each observation
r	Numeric, Size parameters of negative binomial distribution.
alpha	Numeric, Parameter fo beta distribution, which is prior for p of negative binomial distribution
beta	Numeric, Parameter fo beta distribution, which is prior for p of negative binomial distribution
count.res	Integer, Approximation resolution of count
p.res	Integer, Approximation resolution of parameter p

Details

This function is responsible for generating instance of LnbDict. This involves calculate negative binomial probability for grid points of count and p. Futhermore, this calculate index conversion for count and p (see details in LnbDict. This also calculate log prior values for p.vec.

Value

lnb.dict Instance of class LnbDict

Author(s)

Yasuhiro Kojima

See Also

[LnbDict]

kojikoji/nbcf documentation built on June 16, 2019, 6:08 p.m.