saveLineByLine: Converts rules to LineByLine format.

In komorowskilab/R.ROSETTA: R.ROSETTA: an interpretable machine learning framework

Description

Saves rule table as LineByLine txt format that is compatible with VisuNet and Ciruvis framework.

Usage

saveLineByLine(rules, path, discrete=FALSE, filterByPval=FALSE, pval=0.05)

Arguments

rules	A data frame of rule table in a form of rosetta output.
path	Path to save the output file. Should contain the name of the file with .txt extension.
discrete	Logical. If TRUE data are discrete. If FALSE data are not discrete values. Default FALSE.
filterByPval	Logical. If TRUE the filtration is performed. Default is FALSE.
pval	A numeric value containing p-value threshold. Default is 0.05.

Author(s)

Mateusz Garbulowski

Examples

library(R.ROSETTA)

out <- rosetta(autcon)
rules <- out$main

# default
saveLineByLine(rules, "outFile.txt")

# filter by p-value
saveLineByLine(rules, "outFile.txt", filterByPval=TRUE, pval=0.01)

komorowskilab/R.ROSETTA documentation built on April 5, 2021, 9:41 a.m.