check_that_species_are_tested_for_more_than_one_concentration: Check that species are tested for more than one concentration

In konkam/RTTanalyse: Analysis of Rapid Toxicity Tests data using a hierarchical model

Description

Check that species are tested for more than one concentration

Usage

check_that_species_are_tested_for_more_than_one_concentration(wide_dataset)

Arguments

dataset	The loaded dataset. Must contain only one contaminant.
concentration_col_name	The name of the column containing the concentrations.
time_col_name	The name of the column containing the time stamps.
n_alive_col_name	The name of the column containing the number of animals alive.
species_identifier_col_name	The name of the column containing a single identifier per species.
test_id_col_name	The name of the column containing a identifier to dis-ambiguate several tests for the same species.
keep_only	Choose whether to keep the whole dataset or only the necessary columns

Value

The dataset with columns number_alive, concentration, time and species and eventually the test_id.

Examples

library(tidyverse)
dataset = read_csv('../data/RTT_dataV2.csv') %>%
    setNames(nm = sapply(X = names(.), FUN = function(xx) gsub(' ','_',xx)))

Finish when some more pre-processing is done

dataset %>%
   rename()

konkam/RTTanalyse documentation built on May 20, 2019, 12:55 p.m.