R/data.R

In kpjonsson/annotate-maf: Functional Annotation of Variants in a MAF File

#' Variant classification of coding mutations
#' @format List of variants considered coding, by VEP variant class labels.
'coding_mutations'

#' Variant classification of truncating mutations
#' @format List of variants considered protein truncating, by VEP variant class labels.
'truncating_mutations'

#' Mutation hotspots
#' @format data.frame with SNV and indel hotspots from Taylor lab.
#' @source \url{http://cancerhotspots.org}
'hotspots'

#' BRCA Exchange annotate variants in BRCA1 and BRCA2
#' @format Germline variants in BRCA1/2 with annotation in BRCA Exchange.
#' @source \url{https://brcaexchange.org/}
'brca_exchange_variants'