pmfprof: pmfprof

In kralljr/pmfr: R with Positive Matrix Factorization (PMF)

Description

Reading in and formatting profile data

Usage

pmfprof(x, ...)

## Default S3 method:
pmfprof(dat, dir = "./", rms = NULL, prefix,
  constrain = F, cn = NULL, scale = F, sep = ",")

## S3 method for class 'pmfprof'
print(x)

## S3 method for class 'pmfprof'
plot(x, scale = T, type = F, size = 12)

Arguments

dat	full path to original constituent dataset
dir	path to PMF result
rms	character vector of constituents removed from PMF run
prefix	prefix of PMF result
constrain	was constrained PMF run? (default = F)
cn	optional column names for sources
scale	whether to scale profiles (default = F)

Details

pmfprof Read in profile data

These are functions to read in and format PMF output profiles

Examples

# Save nycdat.csv and PMF output to working directory
prof <- pmfprof("nycdat.csv", prefix = "pmfdatex")
print(prof)
plot(prof)
summary(prof)

kralljr/pmfr documentation built on Oct. 24, 2019, 11:02 p.m.