Files in kridsadakorn/ipcaps.bioc
Iterative Pruning to Capture Population Structure
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.Rmd
NEWS.md
R/check.stopping.R
R/clustering.R
R/clustering.mode.R
R/data.R
R/export.groups.R
R/get.node.info.R
R/ipcaps-package.R
R/ipcaps.R
R/output.template.R
R/parallelization.R
R/postprocess.R
R/preprocess.R
R/process.each.node.R
R/save.eigenplots.html.R
R/save.html.R
R/save.plots.R
R/save.plots.cluster.html.R
R/save.plots.label.html.R
R/top.discriminator.R
README.Rmd
README.md
cran-comments.md
data/ipcaps_example.RData
data/ipcaps_example_PC10.RData
inst/CITATION
inst/extdata/ipcaps_example.RData
inst/extdata/ipcaps_example.bed
inst/extdata/ipcaps_example.bim
inst/extdata/ipcaps_example.fam
inst/extdata/ipcaps_example_PC10.RData
inst/extdata/ipcaps_example_PC10.txt.gz
inst/extdata/ipcaps_example_individuals.txt.gz
inst/extdata/ipcaps_example_rowVar_colInd.txt.gz
ipcaps.Rproj
man/.Rapp.history
man/IPCAPS.BIOC-package.Rd
man/PC.Rd
man/cal.eigen.fit.Rd
man/check.stopping.Rd
man/clustering.Rd
man/clustering.mode.Rd
man/diff.eigen.fit.Rd
man/diff.xy.Rd
man/do.glm.Rd
man/export.groups.Rd
man/get.node.info.Rd
man/ind.info.Rd
man/ipcaps.Rd
man/label.Rd
man/output.template.Rd
man/pasre.categorical.data.Rd
man/postprocess.Rd
man/preprocess.Rd
man/process.each.node.Rd
man/raw.data.Rd
man/replace.missing.Rd
man/save.eigenplots.html.Rd
man/save.html.Rd
man/save.plots.Rd
man/save.plots.cluster.html.Rd
man/save.plots.label.html.Rd
man/snp.info.Rd
man/top.discriminator.Rd
tests/testthat.R
tests/testthat/test_checkstopping.R
tests/testthat/test_clusteringmode.R
tests/testthat/test_ipcaps.R
tests/testthat/test_parallel.R
vignettes/.gitignore
vignettes/how_to_analyze_SNP_data.Rmd
vignettes/img/pca_cluster.png
vignettes/img/pca_label.png
vignettes/img/scree.png
vignettes/img/text.png
vignettes/input_format.Rmd
