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In kridsadakorn/ipcaps.bioc: Iterative Pruning to Capture Population Structure

Test environments

• OS X 10.14.6, 3.6.1
• win-builder (devel, release)

R CMD check results for OS X

0 errors | 0 warnings | 0 notes

R CMD check results for win-builder: R-release

Status: 1 WARNING, 3 NOTEs

Found the following significant warnings: Warning: replacing previous import 'parallel::clusterApplyLB' by 'snow::clusterApplyLB' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::parApply' by 'snow::parApply' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::stopCluster' by 'snow::stopCluster' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::parCapply' by 'snow::parCapply' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::parRapply' by 'snow::parRapply' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::parSapply' by 'snow::parSapply' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::clusterEvalQ' by 'snow::clusterEvalQ' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::makeCluster' by 'snow::makeCluster' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::clusterSplit' by 'snow::clusterSplit' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::parLapply' by 'snow::parLapply' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::clusterMap' by 'snow::clusterMap' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::clusterExport' by 'snow::clusterExport' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::splitIndices' by 'snow::splitIndices' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::clusterApply' by 'snow::clusterApply' when loading 'IPCAPS.BIOC' Warning: replacing previous import 'parallel::clusterCall' by 'snow::clusterCall' when loading 'IPCAPS.BIOC'

Examples with CPU or elapsed time > 10s user system elapsed ipcaps 37.33 3.33 151.29 top.discriminator 21.36 1.42 55.65 get.node.info 13.68 1.34 52.17 save.plots.label.html 13.15 1.10 54.28 save.plots 12.84 1.25 48.22 save.html 12.70 1.22 50.11 save.plots.cluster.html 12.59 1.18 61.33 export.groups 12.33 1.17 52.57 save.eigenplots.html 10.44 1.03 42.59 ** running examples for arch 'x64' ... [570s] NOTE Examples with CPU or elapsed time > 10s user system elapsed ipcaps 35.08 3.42 148.84 top.discriminator 18.44 1.42 55.83 save.plots 13.09 1.21 60.59 save.eigenplots.html 12.00 1.35 57.81 save.html 11.95 1.26 57.85 save.plots.label.html 11.40 1.00 45.96 export.groups 11.17 1.11 51.01 save.plots.cluster.html 10.06 1.04 44.36 get.node.info 9.19 0.88 42.33

NOTE

Possibly mis-spelled words in DESCRIPTION: Chaichoompu (6:481) IPCAPS (6:469) Intarapanich (6:354) Ipcaps (6:117, 6:233, 6:557, 6:642) Lebret (6:831) Limpiti (6:413) al (6:370, 6:424, 6:496, 6:841) et (6:367, 6:421, 6:493, 6:838)

kridsadakorn/ipcaps.bioc documentation built on Jan. 22, 2020, 11:18 p.m.