Files in kridsadakorn/ipcaps2
Iterative Pruning to Capture Population Structure version 2
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/.DS_Store
R/check.stopping.R
R/clustering.R
R/clustering.mode.R
R/data.R
R/export.groups.R
R/get.node.info.R
R/heatmap.ipcaps.R
R/ipcaps-package.R
R/ipcaps.R
R/output.template.R
R/parallelization.R
R/plot3views.ipcaps.R
R/postprocess.R
R/preprocess.R
R/process.each.node.R
R/save.eigenplots.html.R
R/save.html.R
R/save.plots.R
R/save.plots.cluster.html.R
R/save.plots.label.html.R
R/top.discriminator.R
README.Rmd
README.md
_pkgdown.yml
data/ipcaps_example.rda
docs/404.html
docs/articles/Clustering.html
docs/articles/Clustering_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/IPCAPS-package.html
docs/reference/IPCAPS2-package.html
docs/reference/PC.html
docs/reference/Rplot001.png
docs/reference/cal.eigen.fit.html
docs/reference/check.stopping.html
docs/reference/clustering.html
docs/reference/clustering.mode.html
docs/reference/diff.eigen.fit.html
docs/reference/diff.xy.html
docs/reference/do.glm.html
docs/reference/export.groups.html
docs/reference/figures/bio3_logo.png
docs/reference/figures/biostatgen_logo.png
docs/reference/figures/ipcaps2_icon.png
docs/reference/figures/ipcaps2_logo.png
docs/reference/figures/ipcaps_logo.png
docs/reference/figures/logo.png
docs/reference/get.node.info.html
docs/reference/index.html
docs/reference/ipcaps.html
docs/reference/ipcaps2.html
docs/reference/label.html
docs/reference/output.template.html
docs/reference/pasre.categorical.data.html
docs/reference/postprocess.html
docs/reference/preprocess.html
docs/reference/process.each.node.html
docs/reference/raw.data.html
docs/reference/replace.missing.html
docs/reference/save.eigenplots.html.html
docs/reference/save.html.html
docs/reference/save.plots.cluster.html.html
docs/reference/save.plots.html
docs/reference/save.plots.label.html.html
docs/reference/top.discriminator.html
inst/CITATION
inst/extdata/ipcaps_example.bed
inst/extdata/ipcaps_example.bim
inst/extdata/ipcaps_example.fam
inst/extdata/ipcaps_example.rda
inst/extdata/ipcaps_example_PC10.txt.gz
inst/extdata/ipcaps_example_individuals.txt.gz
inst/extdata/ipcaps_example_rowVar_colInd.txt.gz
ipcaps2.Rproj
man/.DS_Store
man/.Rapp.history
man/IPCAPS2-package.Rd
man/PC.Rd
man/cal.eigen.fit.Rd
man/check.stopping.Rd
man/clustering.Rd
man/clustering.mode.Rd
man/diff.eigen.fit.Rd
man/diff.xy.Rd
man/do.glm.Rd
man/export.groups.Rd
man/figures/bio3_logo.png
man/figures/biostatgen_logo.png
man/figures/ipcaps2_icon.png
man/figures/ipcaps2_logo.png
man/figures/ipcaps_logo.png
man/figures/logo.png
man/get.node.info.Rd
man/heatmap.ipcaps.Rd
man/ipcaps2.Rd
man/label.Rd
man/output.template.Rd
man/pasre.categorical.data.Rd
man/plot3views.ipcaps.Rd
man/postprocess.Rd
man/preprocess.Rd
man/process.each.node.Rd
man/raw.data.Rd
man/replace.missing.Rd
man/save.eigenplots.html.Rd
man/save.html.Rd
man/save.plots.Rd
man/save.plots.cluster.html.Rd
man/save.plots.label.html.Rd
man/top.discriminator.Rd
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test_checkstopping.R
tests/testthat/test_clusteringmode.R
tests/testthat/test_ipcaps.R
tests/testthat/test_parallel.R
vignettes/.gitignore
vignettes/Clustering.Rmd
