Files in kridsadakorn/ipcaps2

Iterative Pruning to Capture Population Structure version 2

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md

R/.DS_Store

R/check.stopping.R R/clustering.R R/clustering.mode.R R/data.R R/export.groups.R R/get.node.info.R R/heatmap.ipcaps.R R/ipcaps-package.R R/ipcaps.R R/output.template.R R/parallelization.R R/plot3views.ipcaps.R R/postprocess.R R/preprocess.R R/process.each.node.R R/save.eigenplots.html.R R/save.html.R R/save.plots.R R/save.plots.cluster.html.R R/save.plots.label.html.R R/top.discriminator.R README.Rmd README.md

_pkgdown.yml

data/ipcaps_example.rda

docs/404.html

docs/articles/Clustering.html

docs/articles/Clustering_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/favicon-16x16.png

docs/favicon-32x32.png

docs/favicon.ico

docs/index.html

docs/link.svg

docs/logo.png

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/IPCAPS-package.html

docs/reference/IPCAPS2-package.html

docs/reference/PC.html

docs/reference/Rplot001.png

docs/reference/cal.eigen.fit.html

docs/reference/check.stopping.html

docs/reference/clustering.html

docs/reference/clustering.mode.html

docs/reference/diff.eigen.fit.html

docs/reference/diff.xy.html

docs/reference/do.glm.html

docs/reference/export.groups.html

docs/reference/figures/bio3_logo.png

docs/reference/figures/biostatgen_logo.png

docs/reference/figures/ipcaps2_icon.png

docs/reference/figures/ipcaps2_logo.png

docs/reference/figures/ipcaps_logo.png

docs/reference/figures/logo.png

docs/reference/get.node.info.html

docs/reference/index.html

docs/reference/ipcaps.html

docs/reference/ipcaps2.html

docs/reference/label.html

docs/reference/output.template.html

docs/reference/pasre.categorical.data.html

docs/reference/postprocess.html

docs/reference/preprocess.html

docs/reference/process.each.node.html

docs/reference/raw.data.html

docs/reference/replace.missing.html

docs/reference/save.eigenplots.html.html

docs/reference/save.html.html

docs/reference/save.plots.cluster.html.html

docs/reference/save.plots.html

docs/reference/save.plots.label.html.html

docs/reference/top.discriminator.html

inst/CITATION

inst/extdata/ipcaps_example.bed

inst/extdata/ipcaps_example.bim

inst/extdata/ipcaps_example.fam

inst/extdata/ipcaps_example.rda

inst/extdata/ipcaps_example_PC10.txt.gz

inst/extdata/ipcaps_example_individuals.txt.gz

inst/extdata/ipcaps_example_rowVar_colInd.txt.gz

ipcaps2.Rproj

man/.DS_Store

man/.Rapp.history

man/IPCAPS2-package.Rd man/PC.Rd man/cal.eigen.fit.Rd man/check.stopping.Rd man/clustering.Rd man/clustering.mode.Rd man/diff.eigen.fit.Rd man/diff.xy.Rd man/do.glm.Rd man/export.groups.Rd

man/figures/bio3_logo.png

man/figures/biostatgen_logo.png

man/figures/ipcaps2_icon.png

man/figures/ipcaps2_logo.png

man/figures/ipcaps_logo.png

man/figures/logo.png

man/get.node.info.Rd man/heatmap.ipcaps.Rd man/ipcaps2.Rd man/label.Rd man/output.template.Rd man/pasre.categorical.data.Rd man/plot3views.ipcaps.Rd man/postprocess.Rd man/preprocess.Rd man/process.each.node.Rd man/raw.data.Rd man/replace.missing.Rd man/save.eigenplots.html.Rd man/save.html.Rd man/save.plots.Rd man/save.plots.cluster.html.Rd man/save.plots.label.html.Rd man/top.discriminator.Rd

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/test_checkstopping.R tests/testthat/test_clusteringmode.R tests/testthat/test_ipcaps.R tests/testthat/test_parallel.R

vignettes/.gitignore

vignettes/Clustering.Rmd

kridsadakorn/ipcaps2 documentation built on June 11, 2022, 8:35 p.m.