Run revdep_details(,"amt")
for more info
..1$ts$min
and ..2$ts$min
.
[1m[22m
No common type for ..1$ts$min
and ..2$ts$min
.
[1mBacktrace:[22m
[90m [39m█
[90m 1. [39m├─%>%
(...)
[90m 2. [39m│ ├─base::withVisible(eval(quote(_fseq
(_lhs
)), env, env))
[90m 3. [39m│ └─base::eval(quote(_fseq
(_lhs
)), env, env)
[90m 4. [39m│ └─base::eval(quote(_fseq
(_lhs
)), env, env)
[90m 5. [39m│ └─_fseq
(_lhs
)
[90m 6. [39m│ └─magrittr::freduce(value, _function_list
)
[90m 7. [39m│ ├─base::withVisible(function_list[k])
[90m 8. [39m│ └─function_list[k]
[90m 9. [39m│ ├─amt::summarize_sampling_rate_many(., c("id", "yday"))
[90m 10. [39m│ └─amt:::summarize_sampling_rate_many.track_xyt(., c("id", "yday")) [90m00_pkg_src/amt/R/eda_sampling_rate.R:94:2[39m
[90m 11. [39m│
Execution halted
```Namespaces in Imports field not imported from:
‘Rcpp’ ‘magrittr’
All declared Imports should be used.
Run revdep_details(,"basket")
for more info
checking tests ... ``` ... Tibble columns must have consistent sizes, only values of size one are recycled:
p0
[1mBacktrace:[22m
[90m 1. [39mtestthat::expect_true(inherits(plot_density(mh1), "ggplot"))
[90m 6. [39mbasket:::plot_density.exchangeability_model(mh1) [90mrevdep/checks/basket/new/basket.Rcheck/00_pkg_src/basket/R/plot.r:31:2[39m
[90m 7. [39mbase::lapply(ps, function(pt) plot_density(x[[pt]])) [90mrevdep/checks/basket/new/basket.Rcheck/00_pkg_src/basket/R/plot.r:50:2[39m
[90m 8. [39mbasket:::FUN(X[[i]], ...)
[90m 10. [39mbasket:::plot_density.mem(x[[pt]]) [90mrevdep/checks/basket/new/basket.Rcheck/00_pkg_src/basket/R/plot.r:31:2[39m
[90m 12. [39mtibble:::$<-.tbl_df
(...) [90mrevdep/checks/basket/new/basket.Rcheck/00_pkg_src/basket/R/plot.r:68:2[39m
[90m 13. [39mtibble:::tbl_subassign(x, i = NULL, as_string(name), list(value))
[90m 14. [39mtibble:::tbl_subassign_col(x, j, value)
[90m 15. [39mtibble:::vec_recycle_rows(...)══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 32 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ] 1. Error: (unknown) (@test-mcmc.r#35) 2. Error: (unknown) (@test-plot.r#12)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"beadplexr")
for more info
checking tests ... ``` ... > library(testthat) > library(beadplexr) > > test_check("beadplexr") [31m──[39m [31m1. Error: ident_bead_pop() works (@test_identify_assay_analyte.R#39) [39m [31m──────────[39m Tibble columns must have consistent sizes, only values of size one are recycled:
BeadID
[1mBacktrace:[22m
[90m 1. [39mbase::$<-
(*tmp*
, BeadID, value = c("A", "B"))
[90m 2. [39mtibble:::$<-.tbl_df
(*tmp*
, BeadID, value = c("A", "B"))
[90m 3. [39mtibble:::tbl_subassign(x, i = NULL, as_string(name), list(value))
[90m 4. [39mtibble:::tbl_subassign_col(x, j, value)
[90m 5. [39mtibble:::vec_recycle_rows(...)══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 344 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] 1. Error: ident_bead_pop() works (@test_identify_assay_analyte.R#39)
Error: testthat unit tests failed Execution halted ```
Package unavailable to check Rd xrefs: ‘trimcluster’
Run revdep_details(,"bench")
for more info
checking examples ... ERROR ``` Running examples in ‘bench-Ex.R’ failed The error most likely occurred in:
Name: autoplot.bench_mark
Title: Autoplot method for bench_mark objects
Aliases: autoplot.bench_mark plot.bench_mark
** Examples
dat <- data.frame(x = runif(10000, 1, 1000), y=runif(10000, 1, 1000))
res <- bench::mark( + dat[dat$x > 500, ], + dat[which(dat$x > 500), ], + subset(dat, x > 500)) Error: All columns in a tibble must be vectors: ```
checking tests ... ``` ... [90m 1. [39mbench::press(...) [90m 5. [39mbench::mark(x) [90m 10. [39mtibble:::as_tibble.list(results, validate = FALSE) [90m 11. [39mtibble:::lst_to_tibble(x, .rows, .name_repair, col_lengths(x)) [90m 12. [39mtibble:::check_valid_cols(x)
══ testthat results ══════════════════════════════════════════════════════════════
[ OK: 146 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 11 ]
1. Error: mark: Uses all.equal to check results by default (@test-mark.R#36)
2. Error: mark: Can use other functions to check results like identical to check results (@test-mark.R#52)
3. Error: mark: works with capabilities('profmem') (@test-mark.R#69)
4. Error: mark: works without capabilities('profmem') (@test-mark.R#81)
5. Error: mark: Can handle NULL
results (@test-mark.R#90)
6. Error: unnest.bench_mark: does not contain result or memory columns (@test-mark.R#184)
7. Error: press: Adds parameters to output (@test-press.R#6)
8. Error: press: Outputs status message before evaluating each parameter (@test-press.R#22)
9. Error: press: expands the grid if has named parameters (@test-press.R#45)
1. ...
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"breathtestcore")
for more info
checking tests ...
``
...
> library(testthat)
>
> #test_check("breathtestcore", filter = "plot_breathtestfit")
> test_check("breathtestcore")
Loading required package: breathtestcore
[31m──[39m [31m1. Error: Single record give valid result after passing through cleanup_data (@t[39m
imust have one dimension, not 2.
[1mBacktrace:[22m
[90m 1. [39mtestthat::expect_lt(rel_diff(d, cf, "m"), 0.02)
[90m 4. [39mbreathtestcore:::rel_diff(d, cf, "m")
[90m 6. [39mtibble:::
[.tbl_df`(cf, cf["parameter"] == parameter, "value")
[90m 7. [39mtibble:::tbl_subset_row(xo, i = i)
[90m 8. [39mtibble:::vec_as_row_index(i, x)
[90m 9. [39mvctrs::vec_as_index(i, nr)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 356 | SKIPPED: 5 | WARNINGS: 0 | FAILED: 1 ] 1. Error: Single record give valid result after passing through cleanup_data (@test_nls_fit.R#46)
Error: testthat unit tests failed Execution halted ```
Package unavailable to check Rd xrefs: ‘breathteststan’
Run revdep_details(,"comperank")
for more info
checking tests ... ``` ... Component "ranking_def": names for target but not for current Component "ranking_od": names for target but not for current
[31m──[39m [31m8. Failure: rank_od handles numeric player
(@test-offense-defense.R#168) [39m [31m────[39m
as.data.frame(tbl_1) not equal to as.data.frame(tbl_2).
Component "ranking_def": names for target but not for current
Component "ranking_od": names for target but not for current
══ testthat results ══════════════════════════════════════════════════════════════
[ OK: 176 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 8 ]
1. Failure: rate_od works (@test-offense-defense.R#26)
2. Failure: rate_od works (@test-offense-defense.R#44)
3. Failure: rate_od handles factor player
(@test-offense-defense.R#68)
4. Failure: rate_od handles numeric player
(@test-offense-defense.R#91)
5. Failure: rank_od works (@test-offense-defense.R#114)
6. Failure: rank_od works (@test-offense-defense.R#127)
7. Failure: rank_od handles factor player
(@test-offense-defense.R#148)
8. Failure: rank_od handles numeric player
(@test-offense-defense.R#168)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"concurve")
for more info
checking examples ... ERROR ``` Running examples in ‘concurve-Ex.R’ failed The error most likely occurred in:
Name: curve_corr
Title: Computes Consonance Intervals for Correlations
Aliases: curve_corr
** Examples
GroupA <- rnorm(50) GroupB <- rnorm(50) joe <- curve_corr(x = GroupA, y = GroupB, alternative = "two.sided", method = "pearson") tibble::tibble(joe[[1]]) Error: All columns in a tibble must be vectors: ```
Namespaces in Imports field not imported from:
‘MASS’ ‘compiler’ ‘rlang’
All declared Imports should be used.
Run revdep_details(,"corrr")
for more info
checking examples ... ERROR ``` ... > > x <- correlate(mtcars)
Correlation method: 'pearson' Missing treated using: 'pairwise.complete.obs'
x %>% focus_if(any_greater_than, .6) [38;5;246m# A tibble: 6 x 6[39m rowname mpg cyl disp hp wt [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [38;5;250m1[39m drat 0.681 -[31m0[39m[31m.[39m[31m700[39m -[31m0[39m[31m.[39m[31m710[39m -[31m0[39m[31m.[39m[31m449[39m -[31m0[39m[31m.[39m[31m712[39m [38;5;250m2[39m qsec 0.419 -[31m0[39m[31m.[39m[31m591[39m -[31m0[39m[31m.[39m[31m434[39m -[31m0[39m[31m.[39m[31m708[39m -[31m0[39m[31m.[39m[31m175[39m [38;5;250m3[39m vs 0.664 -[31m0[39m[31m.[39m[31m811[39m -[31m0[39m[31m.[39m[31m710[39m -[31m0[39m[31m.[39m[31m723[39m -[31m0[39m[31m.[39m[31m555[39m [38;5;250m4[39m am 0.600 -[31m0[39m[31m.[39m[31m523[39m -[31m0[39m[31m.[39m[31m591[39m -[31m0[39m[31m.[39m[31m243[39m -[31m0[39m[31m.[39m[31m692[39m [38;5;250m5[39m gear 0.480 -[31m0[39m[31m.[39m[31m493[39m -[31m0[39m[31m.[39m[31m556[39m -[31m0[39m[31m.[39m[31m126[39m -[31m0[39m[31m.[39m[31m583[39m [38;5;250m6[39m carb -[31m0[39m[31m.[39m[31m551[39m 0.527 0.395 0.750 0.428 x %>% focus_if(any_greater_than, .6, mirror = TRUE) %>% network_plot() Error in matrix_to_cells(j, x) : is_bare_logical(j) is not TRUE Calls: %>% ... tbl_subassign_matrix -> matrix_to_cells -> stopifnot Execution halted ```
checking tests ...
``
...
[90m 1. [39mcorrr::as_cordf(retract(stretch(d)))
[90m 4. [39mcorrr:::retract.data.frame(stretch(d)) [90mrevdep/checks/corrr/new/corrr.Rcheck/00_pkg_src/corrr/R/retract.R:16:2[39m
[90m 5. [39mpurrr::map_dfr(...) [90mrevdep/checks/corrr/new/corrr.Rcheck/00_pkg_src/corrr/R/retract.R:25:2[39m
[90m 6. [39mpurrr::map(.x, .f, ...)
[90m 7. [39mcorrr:::.f(.x[[i]], ...)
[90m 9. [39mtibble:::
[.tbl_df`(.data, .data[, as_label(x)] == .x, ) [90mrevdep/checks/corrr/new/corrr.Rcheck/00_pkg_src/corrr/R/retract.R:27:6[39m
[90m 10. [39mtibble:::tbl_subset_row(xo, i = i)
[90m 11. [39mtibble:::vec_as_row_index(i, x)
[90m 12. [39mvctrs::vec_as_index(i, nr)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 76 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 6 ] 1. Error: Diagonal sets correctly (@test-as_matrix.R#23) 2. Error: Network plot works (@test-plots.R#8) 3. Error: Rearrange return correct order (@test-rearrange.R#8) 4. Failure: Converts to proper structure (@test-rearrange.R#19) 5. Failure: Converts to proper structure (@test-stretch.R#12) 6. Error: retract works (@test-stretch.R#34)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"cutpointr")
for more info
checking tests ... ``` ... names for target but not for current
[31m──[39m [31m12. Failure: boot_test works correctly (@test-cutpointr.R#1404) [39m [31m───────────────[39m btg$d not equal to bt$d. names for current but not for target
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 378 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 12 ] 1. Failure: Cutpointr returns a cutpointr without NAs and a certain Nr of rows (@test-cutpointr.R#11) 2. Failure: Correct cutpoints with example data (@test-cutpointr.R#239) 3. Failure: Correct cutpoints with example data (@test-cutpointr.R#240) 4. Failure: Results for constrained metrics are equal to results by OptimalCutpoints (@test-cutpointr.R#563) 5. Failure: Results for constrained metrics are equal to results by OptimalCutpoints (@test-cutpointr.R#564) 6. Failure: Results for constrained metrics are equal to results by OptimalCutpoints (@test-cutpointr.R#570) 7. Failure: Results for constrained metrics are equal to results by OptimalCutpoints (@test-cutpointr.R#571) 8. Failure: Main metric gets replaced correctly when ties are broken (@test-cutpointr.R#1023) 9. Failure: boot_ci works correctly (@test-cutpointr.R#1378) 1. ...
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"cvms")
for more info
checking tests ... ``` ... Lengths differ: 3 is not 2
[31m──[39m [31m11. Failure: model_verbose reports the correct model functions in validate() (@t[39m ...$NULL not equal to as.character(...). Lengths differ: 3 is not 2
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 1617 | SKIPPED: 12 | WARNINGS: 2 | FAILED: 11 ] 1. Failure: model_verbose reports the correct model functions in cross_validate() (@test_cross_validate.R#910) 2. Failure: model_verbose reports the correct model functions in cross_validate() (@test_cross_validate.R#923) 3. Failure: model_verbose reports the correct model functions in cross_validate() (@test_cross_validate.R#936) 4. Failure: model_verbose reports the correct model functions in cross_validate() (@test_cross_validate.R#948) 5. Failure: model_verbose reports the correct model functions in cross_validate() (@test_cross_validate.R#962) 6. Failure: model_verbose reports the correct model functions in cross_validate() (@test_cross_validate.R#975) 7. Failure: multinomial random predictions work with cross_validate_fn() (@test_cross_validate_fn.R#1448) 8. Failure: model_verbose reports the correct model functions in validate() (@test_validate.R#512) 9. Failure: model_verbose reports the correct model functions in validate() (@test_validate.R#523) 1. ...
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"diffdf")
for more info
checking tests ... ``` ...
[31m──[39m [31m19. Failure: (unknown) (@test-print_output.R#51) [39m [31m──────────────────────────────[39m RES[[i]] not equal to TESTING_print_msg[[i]]. Lengths differ: 186 is not 90 Reference = 21 - With 2 keys
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 549 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 19 ] 1. Failure: Unequal object, checking numbers correct (@test-core.R#186) 2. Failure: Unequal object, checking numbers correct (@test-core.R#187) 3. Failure: Unequal object, checking numbers correct (@test-core.R#188) 4. Failure: Unequal object, checking numbers correct (@test-core.R#189) 5. Failure: Unequal object, checking numbers correct (@test-core.R#190) 6. Failure: Unequal object, checking numbers correct (@test-core.R#191) 7. Failure: Unequal object, checking numbers correct (@test-core.R#192) 8. Failure: Unequal object, checking numbers correct (@test-core.R#193) 9. Failure: (unknown) (@test-print_output.R#51) 1. ...
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"drake")
for more info
checking tests ... ``` ... [31m──[39m [31m45. Failure: basic history (@test-history.R#96) [39m [31m───────────────────────────────[39m is.na(out$hash) not equal to !out$current. names for current but not for target
.══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 4950 | SKIPPED: 257 | WARNINGS: 0 | FAILED: 45 ] 1. Failure: cache functions work from various working directories (@test-cache.R#241) 2. Failure: cache functions work from various working directories (@test-cache.R#241) 3. Failure: 1 grouping level (@test-dsl.R#53) 4. Failure: all new crossings (@test-dsl.R#253) 5. Failure: 1 new map (@test-dsl.R#267) 6. Failure: 2 new maps (@test-dsl.R#281) 7. Failure: command symbols are for combine() but the plan has them (@test-dsl.R#315) 8. Failure: combine different groups together (@test-dsl.R#346) 9. Failure: multiple groups and multiple splits (@test-dsl.R#382) 1. ...
Error: testthat unit tests failed Execution halted Error while shutting down parallel: unable to terminate some child processes ```
Run revdep_details(,"egor")
for more info
checking examples ... ERROR ``` Running examples in ‘egor-Ex.R’ failed The error most likely occurred in:
Name: clustered_graphs
Title: Cluster ego-centered networks by a grouping factor
Aliases: clustered_graphs clustered_graphs.list clustered_graphs.egor
clustered_graphs.data.frame
Keywords: analysis ego-centered network
** Examples
data("egor32")
Simplify networks to clustered graphs, stored as igraph objects
graphs <- clustered_graphs(egor32, "country") Error:
i
must have one dimension, not 2. Execution halted ```
checking tests ... ``` ... Ego sampling design: NULL Alter survey design: Maximum nominations: EI-Index: age EI-Index: sex EI-Index: sex EI-Index: int_var EI-Index: female EI-Index: female ══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 69 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 6 ]
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"eph")
for more info
...
binding character and factor vector, coercing into character vector
Warning in bind_rows_(x, .id) :
binding character and factor vector, coercing into character vector
> bases_clasif <- organize_ocupations(base = bases)
Error: No common type for `..1$value` <character> and `..2$value` <double>.
[1m<error/vctrs_error_incompatible_type>[22m
No common type for `..1$value` <character> and `..2$value` <double>.
[1mBacktrace:[22m
[90m [39m█
[90m 1. [39m├─eph::organize_ocupations(base = bases)
[90m 2. [39m│ └─`%>%`(...) [90m00_pkg_src/eph/R/organize_ocupations.R:21:2[39m
[90m 3. [39m│ ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
[90m 4. [39m│ └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
[90m 5. [39m│ └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
[90m 6. [39m│ └─eph:::`_fseq`(`_lhs`)
[90m 7. [39m│ └─magrittr::freduce(value, `_function_list`)
[90m 8. [39m│ ├─base::withVisible(function_list[[k]](value))
[90m 9. [39m│ └─function_list[[k]](value)
[90m 10. [39m│ └─dplyr::add_row(., value = 99, CATEGORIA = "Ns.Nc")
[90m 11. [39m│
Execution halted
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘readr’ ‘tidyverse’
All declared Imports should be used.
checking data for non-ASCII characters ... NOTE
Note: found 114 marked UTF-8 strings
Run revdep_details(,"evaluator")
for more info
checking examples ... ERROR ``` Running examples in ‘evaluator-Ex.R’ failed The error most likely occurred in:
Name: exposure_histogram
Title: Display a histogram of losses for a scenario
Aliases: exposure_histogram
** Examples
data(mc_simulation_results) result <- mc_simulation_results[[1, "results"]] exposure_histogram(result) Error:
data
must be a data frame, or other object coercible byfortify()
, not a list Execution halted ```
checking tests ... ``` ... Expected match: "iteration" Actual message: "All scenarios must be tidyrisk_scenario objects" [1mBacktrace:[22m [90m 1. [39mtestthat::expect_error(...) [90m 6. [39mevaluator::run_simulations(good_scen, simulation_count = 10L)
[31m──[39m [31m6. Error: Simulation summary handles NAs for tc/diff exceedance (@test-summarize[39m [[ ]] improper number of subscripts
# Scenario model: openfair_tef_tc_diff_lm ══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 128 | SKIPPED: 4 | WARNINGS: 12 | FAILED: 6 ] 1. Error: SR model works as expected (@test-openfair.R#220) 2. Error: Simulation respects maximum ALE (@test-simulate.R#21) 3. Failure: Missing mandatory OpenFAIR factors are detected (@test-simulate.R#29) 4. Failure: Bad scenario parameters throw an error (@test-simulate.R#36) 5. Failure: Multiple simulations deprecates the simulation_count parameters (@test-simulate.R#56) 6. Error: Simulation summary handles NAs for tc/diff exceedance (@test-summarize.R#17)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"exuber")
for more info
checking tests ...
``
...
> library(exuber)
Registered S3 method overwritten by 'exuber':
method from
index.default zoo
>
> test_check("exuber")
[31m──[39m [31m1. Failure: crit as data (@test-cv.R#4) [39m [31m───────────────────────────────────────[39m
capture.output(print(crit))threw an error.
Message: Expected a vector, not a
list/crit` object
Class: vctrs_error_scalar_type/vctrs_error/rlang_error/error/condition
[1mBacktrace:[22m
[90m 1. [39mbase::print(crit)
[90m 19. [39mvctrs:::stop_scalar_type(...)
[90m 20. [39mvctrs:::stop_vctrs(msg, "vctrs_error_scalar_type", actual = x)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 258 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ] 1. Failure: crit as data (@test-cv.R#4)
Error: testthat unit tests failed Execution halted ```
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 2.5Mb
libs 2.5Mb
Run revdep_details(,"feasts")
for more info
checking examples ... ERROR ``` ...
Attaching package: ‘dplyr’
The following object is masked from ‘package:tsibble’:
id
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Error: All columns in a tibble must be vectors: ```
checking tests ... ``` ...
fable::ARIMA(value ~ 0 + pdq(1, 1, 1) + PDQ(1, 1, 2))
is lst_mdl
[1mBacktrace:[22m
[90m 1. [39mfeasts::gg_arma(mdl)
[90m 2. [39m%>%
(...) [90mrevdep/checks/feasts/new/feasts.Rcheck/00_pkg_src/feasts/R/graphics.R:628:2[39m
[90m 4. [39m[ base::eval(...) ][90m with 1 more call[39m
[90m 6. [39mfeasts:::_fseq
(_lhs
)
[90m 7. [39mmagrittr::freduce(value, _function_list
)
[90m 8. [39mfunction_list[i]
[90m 10. [39mfabletools:::glance.mdl_df(.)
[90m 12. [39mfabletools:::gather.mdl_df(...)
[90m 15. [39mfabletools:::as_tibble.mdl_df(data)
[90m 17. [39mtibble:::as_tibble.data.frame(x, ...)
[90m 18. [39mtibble:::lst_to_tibble(unclass(x), .rows, .name_repair)
[90m 19. [39mtibble:::check_valid_cols(x)══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 103 | SKIPPED: 0 | WARNINGS: 11 | FAILED: 1 ] 1. Error: gg_arma() plots (@test-graphics.R#253)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"foieGras")
for more info
checking tests ... ``` ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(foieGras) > > test_check("foieGras")
pre-filtering data...
fitting SSM...
[31m──[39m [31m1. Failure: plot completes silently (@test-osar.R#22) [39m [31m─────────────────────────[39m
plot(r, "hist")
produced warnings.
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 37 | SKIPPED: 14 | WARNINGS: 0 | FAILED: 1 ] 1. Failure: plot completes silently (@test-osar.R#22)
Error: testthat unit tests failed Execution halted ```
installed size is 43.4Mb
sub-directories of 1Mb or more:
libs 42.1Mb
Run revdep_details(,"forestmangr")
for more info
``
...
2:
.key` is deprecated
>
> # This can also be done directly using "merge_est" as output:
> nls_table(exfm14,dh ~ b0 * (1 - exp( -b1 * age ) )^b2, .key
is deprecated
2: unnest() has a new interface. See ?unnest for details.
Try df %>% unnest(c(est_n, data_n))
, with mutate()
if needed
3: unnest() has a new interface. See ?unnest for details.
Try df %>% unnest(c(dat, est))
, with mutate()
if needed
Execution halted
```Run revdep_details(,"googlesheets4")
for more info
checking tests ... ``` ...
[31m──[39m [31m5. Error: can shim four sides (@test-utils-sheet-geometry.R#77) [39m [31m───────────────[39m
No common type for ..1$cell
and ..2$cell
.
[1mBacktrace:[22m
[90m 1. [39mgooglesheets4:::expect_shim("A1:E4")
[90m 18. [39mvctrs:::vec_ptype2.character.default(...)
[90m 19. [39mvctrs::vec_default_ptype2(x, y, x_arg = x_arg, y_arg = y_arg)
[90m 20. [39mvctrs::stop_incompatible_type(x, y, x_arg = x_arg, y_arg = y_arg)
[90m 21. [39mvctrs:::stop_incompatible(...)
[90m 22. [39mvctrs:::stop_vctrs(...)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 187 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 5 ] 1. Error: can shim a single side (@test-utils-sheet-geometry.R#38) 2. Error: can shim two opposing sides (@test-utils-sheet-geometry.R#49) 3. Error: can shim on two perpendicular sides (@test-utils-sheet-geometry.R#56) 4. Error: can shim three sides (@test-utils-sheet-geometry.R#67) 5. Error: can shim four sides (@test-utils-sheet-geometry.R#77)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"haven")
for more info
checking Rd cross-references ... WARNING ``` Missing link or links in documentation object 'read_dta.Rd': ‘name-repair’
Missing link or links in documentation object 'read_sas.Rd': ‘name-repair’
Missing link or links in documentation object 'read_spss.Rd': ‘name-repair’
Missing link or links in documentation object 'read_xpt.Rd': ‘name-repair’
See section 'Cross-references' in the 'Writing R Extensions' manual. ```
checking installed package size ... NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
libs 5.5Mb
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
Run revdep_details(,"healthcareai")
for more info
checking examples ... ERROR ``` ... > > ### ** Examples > > models <- machine_learn(pima_diabetes[1:40, ],
The argument options
is deprecated in favor of freq_cut
and unique_cut
. options` will be removed in next version.
Variable(s) ignored in prep_data won't be used to tune models: patient_id
diabetes looks categorical, so training classification algorithms.
After data processing, models are being trained on 12 features with 40 observations. Based on n_folds = 3 and hyperparameter settings, the following number of models will be trained: 3 xgb's and 3 rf's
Training at fixed values: eXtreme Gradient Boosting Training at fixed values: Random Forest ```
checking tests ... ``` ... > if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
goal
must be a vector, not a primitive function
[1mBacktrace:[22m
[90m 1. [39mhealthcareai::machine_learn(...)
[90m 25. [39mvctrs:::stop_scalar_type(...)
[90m 26. [39mvctrs:::stop_vctrs(msg, "vctrs_error_scalar_type", actual = x)══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] 1. Error: the fundamentals work (@test-cran_only.R#4)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"heemod")
for more info
checking examples ... ERROR ``` Running examples in ‘heemod-Ex.R’ failed The error most likely occurred in:
Name: define_dsa
Title: Define a Sensitivity Analysis
Aliases: define_dsa define_dsa_
** Examples
define_dsa( + a, 10, 45, + b, .5, 1.5 + ) Error: All columns in a tibble must be vectors: ```
checking tests ...
``
...
[90m 4. [39mheemod:::define_dsa_(...) [90mrevdep/checks/heemod/new/heemod.Rcheck/00_pkg_src/heemod/R/tabular_input.R:639:4[39m
[90m 11. [39mtibble::tibble(dots[i])
[90m 12. [39mtibble:::tibble_quos(xs[!is_null], .rows, .name_repair)
[90m 13. [39mtibble:::check_valid_col(res, col_names[[j]], j)
[90m 14. [39mtibble:::check_valid_cols(list2(
:=`(!!name, x)))
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 470 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 12 ] 1. Error: Same results using 1 core or 2. (@test_parallel.R#7) 2. Failure: Parameter evaluation (@test_parameters.R#81) 3. Error: we can run construct_part_surv_tib (@test_part_surv.R#298) 4. Error: define sensitivity (@test_sensitivity.R#5) 5. Error: run sensitivity (@test_sensitivity.R#101) 6. Error: discount rate as a parameter works (@test_sensitivity.R#173) 7. Error: sensitivity expression inputs (@test_sensitivity.R#236) 8. Error: can read multinomial parameters from file (@test_tabular_input.R#110) 9. Failure: Bad parameter file input is caught. (@test_tabular_input.R#379) 1. ...
Error: testthat unit tests failed Execution halted ```
Package suggested but not available for checking: ‘rgho’
Run revdep_details(,"INDperform")
for more info
checking examples ... ERROR ``` Running examples in ‘INDperform-Ex.R’ failed The error most likely occurred in:
Name: merge_models
Title: Merging two model output tibbles.
Aliases: merge_models
** Examples
Using some models of the Baltic Sea demo data:
Merging GAM and GAMM tibbles
test_ids <- 47:50 # choose subset gam_tbl <- model_gam_ex[test_ids,] gamm_tbl <- model_gamm(ind_init_ex[test_ids,], filter= gam_tbl$tac) Error in model_gamm(ind_init_ex[test_ids, ], filter = gam_tbl$tac) : No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()). Execution halted ```
checking tests ... ``` ... [90m 10. [39mvctrs::stop_incompatible_type(x, y, x_arg = x_arg, y_arg = y_arg) [90m 11. [39mvctrs:::stop_incompatible(...) [90m 12. [39mvctrs:::stop_vctrs(...)
[31m──[39m [31m3. Error: (unknown) (@test_test_interaction.R#27) [39m [31m─────────────────────────────[39m
No common type for value
and x
.
[1mBacktrace:[22m
[90m 1. [39mbase::[<-
(*tmp*
, 1, -c(1:4), value = NA)
[90m 8. [39mvctrs:::vec_ptype2.logical.list(...)
[90m 9. [39mvctrs::stop_incompatible_type(x, y, x_arg = x_arg, y_arg = y_arg)
[90m 10. [39mvctrs:::stop_incompatible(...)
[90m 11. [39mvctrs:::stop_vctrs(...)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 506 | SKIPPED: 0 | WARNINGS: 29 | FAILED: 3 ] 1. Error: (unknown) (@test_model_gamm.R#4) 2. Error: (unknown) (@test_scoring.R#15) 3. Error: (unknown) (@test_test_interaction.R#27)
Error: testthat unit tests failed Execution halted ```
Namespace in Imports field not imported from: ‘lazyeval’
All declared Imports should be used.
Run revdep_details(,"interactions")
for more info
checking examples ... ERROR
...
> ### Title: Plot interaction effects in regression models
> ### Aliases: interact_plot
>
> ### ** Examples
>
> # Using a fitted lm model
> states <- as.data.frame(state.x77)
> states$HSGrad <- states$`HS Grad`
> fit <- lm(Income ~ HSGrad + Murder * Illiteracy, data = states)
> interact_plot(model = fit, pred = Murder, modx = Illiteracy)
Error: Must extract with a single index.
[31mx[39m `j` has the wrong type `symbol`.
[34mℹ[39m This index must be a position or a name.
Backtrace:
[90m 1. [39minteractions::interact_plot(model = fit, pred = Murder, modx = Illiteracy)
[90m 2. [39minteractions:::plot_mod_continuous(...) [90m00_pkg_src/interactions/R/interact_plot.R:424:2[39m
[90m 5. [39mtibble:::`[[.tbl_df`(d, pred) [90m00_pkg_src/interactions/R/interact_plot.R:645:2[39m
[90m 6. [39mtibble:::tbl_subset2(x, j = i)
[90m 7. [39mvctrs::vec_as_position(j, length(x), names(x), arg = "j")
[90m 8. [39mvctrs:::maybe_get(...)
Execution halted
checking tests ... ``` ... [90m 11. [39mtibble:::tbl_subset2(x, j = i) [90m 12. [39mvctrs::vec_as_position(j, length(x), names(x), arg = "j") [90m 13. [39mvctrs:::maybe_get(...)
Failed with error: 'there is no package called 'brms'' Failed with error: 'there is no package called 'rstanarm'' ══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 122 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 13 ] 1. Error: interact_plot works for lm (@test_interact_plot.R#33) 2. Error: interact_plot: robust standard errors work (@test_interact_plot.R#60) 3. Error: rug plots work (@test_interact_plot.R#70) 4. Error: interact_plot works for weighted lm (@test_interact_plot.R#90) 5. Error: interact_plot works for lm w/ logical (@test_interact_plot.R#100) 6. Error: interact_plot works for lm w/ non-focal character (@test_interact_plot.R#111) 7. Error: interact_plot accepts user-specified values and labels (@test_interact_plot.R#118) 8. Error: interact_plot terciles modxval/mod2val works (@test_interact_plot.R#140) 9. Error: interact_plot linearity.check works (@test_interact_plot.R#151) 1. ...
Error: testthat unit tests failed Execution halted ```
checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'brms', 'rstanarm'
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘quantreg’, ‘brms’, ‘effects’, ‘Hmisc’, ‘rockchalk’, ‘pequod’
Run revdep_details(,"janitor")
for more info
checking examples ... ERROR ``` ... > # calculates correctly even with totals column and/or row: > mtcars %>%
value
and x
.
[1m[22m
No common type for value
and x
.
[1mBacktrace:[22m
[90m [39m█
[90m 1. [39m├─mtcars %>% tabyl(am, cyl) %>% adorn_totals("row") %>% adorn_percentages()
[90m 2. [39m│ ├─base::withVisible(eval(quote(_fseq
(_lhs
)), env, env))
[90m 3. [39m│ └─base::eval(quote(_fseq
(_lhs
)), env, env)
[90m 4. [39m│ └─base::eval(quote(_fseq
(_lhs
)), env, env)
[90m 5. [39m│ └─_fseq
(_lhs
)
[90m 6. [39m│ └─magrittr::freduce(value, _function_list
)
[90m 7. [39m│ └─function_list[i]
[90m 8. [39m│ └─janitor::adorn_totals(., "row")
[90m 9. [39m│ ├─base::[<-
(*tmp*
, 1, 1, value = "Total") [90m00_pkg_src/janitor/R/adorn_totals.R:67:6[39m
[90m 10. [39m│ └─tibble:::[<-.tbl_df
(*tmp*
, 1, 1, value = "Total") [90
Execution halted
```checking tests ... ``` ... [90m 29. [39mvctrs:::vec_ptype2.character.default(...) [90m 30. [39mvctrs::vec_default_ptype2(x, y, x_arg = x_arg, y_arg = y_arg) [90m 31. [39mvctrs::stop_incompatible_type(x, y, x_arg = x_arg, y_arg = y_arg) [90m 32. [39mvctrs:::stop_incompatible(...) [90m 33. [39mvctrs:::stop_vctrs(...)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 522 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 12 ] 1. Error: grouped_df gets ungrouped and succeeds (@test-add-totals.R#122) 2. Error: na.rm value works correctly (@test-add-totals.R#129) 3. Error: add_totals respects if input was data.frame (@test-add-totals.R#141) 4. Error: add_totals respects if input was data_frame (@test-add-totals.R#148) 5. Error: works with non-numeric columns mixed in; fill character specification (@test-add-totals.R#192) 6. Error: automatically invokes purrr::map when called on a 3-way tabyl (@test-add-totals.R#251) 7. Error: deprecated functions adorn_totals_col and adorn_totals_row function as expected (@test-add-totals.R#283) 8. Error: (unknown) (@test-adorn-percentages.R#44) 9. Error: non-tabyls are treated correctly (@test-adorn-title.R#49) 1. ...
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"jstor")
for more info
checking examples ... ERROR ``` Running examples in ‘jstor-Ex.R’ failed The error most likely occurred in:
Name: jst_define_import
Title: Define an import specification
Aliases: jst_define_import
** Examples
articles will be imported via
jst_get_article()
andjst_get_authors()
jst_define_import(article = c(jst_get_article, jst_get_authors)) Error: All columns in a tibble must be vectors: ```
checking tests ...
``
...
[1mBacktrace:[22m
[90m 1. [39mtestthat::expect_error(...)
[90m 10. [39mjstor::jst_define_import(article = jst_get_article)
[90m 11. [39mtibble::tibble(...) [90mrevdep/checks/jstor/new/jstor.Rcheck/00_pkg_src/jstor/R/import_spec.R:170:2[39m
[90m 12. [39mtibble:::tibble_quos(xs[!is_null], .rows, .name_repair)
[90m 13. [39mtibble:::check_valid_col(res, col_names[[j]], j)
[90m 14. [39mtibble:::check_valid_cols(list2(
:=`(!!name, x)))
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 227 | SKIPPED: 4 | WARNINGS: 3 | FAILED: 8 ] 1. Failure: authors are correct (@test-books.R#117) 2. Error: jst_define_import returns correct class (@test-import-spec.R#4) 3. Error: jst_define_import validates input (@test-import-spec.R#11) 4. Error: jst_define_imports gives correct results (@test-import-spec.R#46) 5. Error: subsetting ngrams works (@test-ngram.R#32) 6. Error: importing from zip works (@test-zip.R#29) 7. Failure: too many arguments for batches throw error (@test-zip.R#56) 8. Failure: wrong row selection raises an error (@test-zip.R#68)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"jtools")
for more info
checking examples ... ERROR
``
...
> ### Aliases: effect_plot
>
> ### ** Examples
>
> # Using a fitted lm model
> states <- as.data.frame(state.x77)
> states$HSGrad <- states$
HS Grad`
> fit <- lm(Income ~ HSGrad + Murder,
effect_plot(model = fit, pred = Murder) Error: Must extract with a single index. [31mx[39m
j
has the wrong typesymbol
. [34mℹ[39m This index must be a position or a name. Backtrace: [90m 1. [39mjtools::effect_plot(model = fit, pred = Murder) [90m 2. [39mjtools:::plot_effect_continuous(...) [90m00_pkg_src/jtools/R/effect_plot.R:291:4[39m [90m 5. [39mtibble:::[[.tbl_df
(d, pred) [90m00_pkg_src/jtools/R/effect_plot.R:390:2[39m [90m 6. [39mtibble:::tbl_subset2(x, j = i) [90m 7. [39mvctrs::vec_as_position(j, length(x), names(x), arg = "j") [90m 8. [39mvctrs:::maybe_get(...) Execution halted ```
checking tests ... ``` ... [90m 11. [39mtibble:::tbl_subset2(x, j = i) [90m 12. [39mvctrs::vec_as_position(j, length(x), names(x), arg = "j") [90m 13. [39mvctrs:::maybe_get(...)
Failed with error: 'there is no package called 'brms'' Failed with error: 'there is no package called 'rstanarm'' ══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 279 | SKIPPED: 0 | WARNINGS: 29 | FAILED: 11 ] 1. Error: effect_plot works for lm (@test-effect-plot.R#25) 2. Error: effect_plot: robust intervals works (@test-effect-plot.R#37) 3. Error: effect_plot: rug plots work (@test-effect-plot.R#45) 4. Error: effect_plot: plot.points works (@test-effect-plot.R#59) 5. Error: effect_plot: partial residuals work (@test-effect-plot.R#74) 6. Error: effect_plot works for weighted lm (@test-effect-plot.R#89) 7. Error: effect_plot works for svyglm (@test-effect-plot.R#134) 8. Error: effect_plot works for lme4 (@test-effect-plot.R#165) 9. Error: effect_plot handles offsets (@test-effect-plot.R#206) 1. ...
Error: testthat unit tests failed Execution halted ```
checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'brms', 'quantreg', 'rstanarm'
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘wec’, ‘quantreg’, ‘brms’, ‘arm’, ‘interactions’, ‘effects’, ‘piecewiseSEM’
Run revdep_details(,"keyholder")
for more info
checking tests ...
``
...
> test_check("keyholder")
[31m──[39m [31m1. Failure: add_id works on grouped_df (@test-id.R#46) [39m [31m────────────────────────[39m
output_1not identical to
output_ref_1`.
Objects equal but not identical
[31m──[39m [31m2. Failure: key_by_id works on grouped_df (@test-id.R#85) [39m [31m─────────────────────[39m
output_1
not identical to output_ref_1
.
Objects equal but not identical
[31m──[39m [31m3. Failure: key_by_id works on grouped_df (@test-id.R#108) [39m [31m────────────────────[39m
output_3
not identical to output_ref_3
.
Objects equal but not identical
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 306 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ] 1. Failure: add_id works on grouped_df (@test-id.R#46) 2. Failure: key_by_id works on grouped_df (@test-id.R#85) 3. Failure: key_by_id works on grouped_df (@test-id.R#108)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"metacoder")
for more info
checking tests ...
``
...
> test_check("metacoder")
[31m──[39m [31m1. Failure: Summing counts per taxon (@test--calculations.R#103) [39m [31m──────────────[39m
sum(x$data$tax_data$
700035949) not equal to result$
700035949`[1].
names for current but not for target
[31m──[39m [31m2. Failure: Summing counts per taxon (@test--calculations.R#126) [39m [31m──────────────[39m
total_counts
not equal to result$total[1].
names for current but not for target
[31m──[39m [31m3. Failure: Parsing the UNITE general release fasta (@test--parsers_and_writers.[39m result$data$tax_data$unite_seq[5] not equal to "CCAAATCATGTCTCCCGGCCGCAAGGCAGGTGCAGGCGTTTAACCCTTTGTGAACCAAAAAACCTTTCGCTTCGGCAGCAGCTCGGTTGGAGACAGCCTCTGTGTCAGCCTGCCGCTAGCACCAATTATCAAAACTTGCGGTTAGCAACATTGTCTGATTACCAAATTTTCGAATGAAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAACGCGATAGTTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCATTGGTATTCCATTGGGCATGTCTGTTTGAGCGTCATTACAACCCTCGGTCACCACCGGTTTTGAGCGAGCAGGGTCTTCGGATCCAGCTGGCTTTAAAGTTGTAAGCTCTGCTGGCTGCTCGGCCCAACCAGAACATAGTAAAATCATGCTTGTTCAAGGTTCGCGGTCGAAGCGGTACGGCCTGAACAATACCTACCACCTCTTAGG". names for target but not for current
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 93 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 3 ] 1. Failure: Summing counts per taxon (@test--calculations.R#103) 2. Failure: Summing counts per taxon (@test--calculations.R#126) 3. Failure: Parsing the UNITE general release fasta (@test--parsers_and_writers.R#119)
Error: testthat unit tests failed Execution halted ```
Namespaces in Imports field not imported from:
‘ggrepel’ ‘reshape’ ‘svglite’
All declared Imports should be used.
Run revdep_details(,"MNLpred")
for more info
checking examples ... ERROR ``` ... > ### ** Examples > > library(nnet) > library(MASS) > > dataset <- data.frame(y = c(rep("a", 10), rep("b", 10), rep("c", 10)),
mod <- multinom(y ~ x1 + x2 + x3, data = dataset, Hess = TRUE)
initial value 32.958369 iter 10 value 30.528006 final value 30.525569 converged
fdi1 <- mnl_fd2_ova(model = mod, data = dataset, + xvari = "x1", + value1 = min(dataset$x1), value2 = max(dataset$x1)) Error: Lossy cast from
value
tox
. ```
checking tests ...
``
...
# weights: 21 (12 variable)
initial value 219.722458
iter 10 value 189.686272
final value 168.079235
converged
[31m──[39m [31m1. Error: mnl_pred_ova() returns two predictions when by = NULL (@test_inputvari[39m
Lossy cast from
value<double> to
x` .
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] 1. Error: mnl_pred_ova() returns two predictions when by = NULL (@test_inputvariants.R#17)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"MPTmultiverse")
for more info
checking tests ... ``` ... target is NULL, current is numeric
[31m──[39m [31m16. Failure: No-pooling approaches work (@test-mptinr.R#136) [39m [31m──────────────────[39m only_npb$est_indiv[[1]]$se not equal to c(...). target is NULL, current is numeric
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 19 | SKIPPED: 3 | WARNINGS: 14 | FAILED: 16 ] 1. Failure: No-pooling approaches work (@test-mptinr.R#61) 2. Failure: No-pooling approaches work (@test-mptinr.R#62) 3. Failure: No-pooling approaches work (@test-mptinr.R#63) 4. Failure: No-pooling approaches work (@test-mptinr.R#68) 5. Failure: No-pooling approaches work (@test-mptinr.R#73) 6. Failure: No-pooling approaches work (@test-mptinr.R#78) 7. Failure: No-pooling approaches work (@test-mptinr.R#84) 8. Failure: No-pooling approaches work (@test-mptinr.R#92) 9. Failure: No-pooling approaches work (@test-mptinr.R#107) 1. ...
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"OncoBayes2")
for more info
checking tests ... ``` ...
Population heterogeniety posterior tau_log_beta intercept: mean se_mean sd 2.5% 50% 97.5% n_eff Rhat 0.74 1.02 0.79 0.21 0.74 1.27 0.60 Inf log-slope: mean se_mean sd 2.5% 50% 97.5% n_eff Rhat 0.2644 0.0024 0.0019 0.2631 0.2644 0.2657 0.6021 Inf
Population correlation posterior rho_log_beta mean se_mean sd 2.5% 50% 97.5% n_eff Rhat I(log(drug1/1)) 0.088 0.44 0.34 -0.14 0.088 0.32 0.6 Inf
No interaction model posterior specified. Error in na.fail.default(X[[i]], ...) : missing values in object ══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 130 | SKIPPED: 4 | WARNINGS: 162 | FAILED: 1 ] 1. Error: update.blrmfit grows the data set (@test-blrm_exnex.R#264)
Error: testthat unit tests failed Execution halted ```
checking installed package size ... NOTE
installed size is 48.7Mb
sub-directories of 1Mb or more:
libs 47.3Mb
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
Run revdep_details(,"oppr")
for more info
checking tests ... ``` ...
Excellent numeric accuracy ||*|| = 1.11022e-16
MEMO: lp_solve version 5.5.2.0 for 64 bit OS, with 64 bit LPSREAL variables. In the total iteration count 29, 4 (13.8%) were bound flips. There were 5 refactorizations, 0 triggered by time and 0 by density. ... on average 5.0 major pivots per refactorization. The largest [LUSOL v2.2.1.0] fact(B) had 58 NZ entries, 1.1x largest basis. The maximum B&B level was 4, 0.1x MIP order, 3 at the optimal solution. The constraint matrix inf-norm is 1, with a dynamic range of 10. Time to load data was 0.031 seconds, presolve used 0.000 seconds, ... 0.001 seconds in simplex solver, in total 0.032 seconds. ══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 1479 | SKIPPED: 35 | WARNINGS: 0 | FAILED: 4 ] 1. Failure: valid arguments (@test_project_cost_effectiveness.R#27) 2. Failure: valid arguments (@test_project_cost_effectiveness.R#36) 3. Failure: valid arguments (different number of actions/projects (@test_project_cost_effectiveness.R#63) 4. Failure: valid arguments (different number of actions/projects (@test_project_cost_effectiveness.R#69)
Error: testthat unit tests failed Execution halted ```
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘gurobi’
checking installed package size ... NOTE
installed size is 19.3Mb
sub-directories of 1Mb or more:
R 3.9Mb
libs 14.3Mb
Run revdep_details(,"pkgsearch")
for more info
checking examples ... ERROR ``` ... 10 19 vcd 1.4.4 David Meyer 2y Visualizing Categorical Data > ps()
Error: Expected a vector, not a package_version/numeric_version
object
[1m[22m
Expected a vector, not a package_version/numeric_version
object
[1mBacktrace:[22m
[90m [39m█
[90m 1. [39m├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
[90m 2. [39m│ └─base::source(...)
[90m 3. [39m│ ├─base::print(yy$value)
[90m 4. [39m│ └─pkgsearch:::print.pkg_search_result(yy$value)
[90m 5. [39m│ └─pkgsearch:::cat_hit(x, i) [90m00_pkg_src/pkgsearch/R/print.R:57:4[39m
[90m 6. [39m│ ├─x[no, ] [90m00_pkg_src/pkgsearch/R/print.R:68:2[39m
[90m 7. [39m│ ├─pkgsearch:::[.pkg_search_result
(x, no, ) [90m00_pkg_src/pkgsearch/R/print.R:68:2[39m
[90m 8. [39m│ ├─base::NextMethod("[") [90m00_pkg_src/pkgsearch/R/api.R:296:2[39m
[90m 9. [39m│ └─tibble:::[.tbl_df
(x, no, )
[90m 10. [39m│ └─tibble:::tbl_subset_row(xo, i = i)
[
Execution halted
```
Run revdep_details(,"pmdplyr")
for more info
checking examples ... ERROR ``` ... > # Let's only use nonmissing earnings > # And let's say we're only interested in four-year colleges in Colorado > # (mutate_cascade + tlag can be very slow so we're working with a smaller sample) > Scorecard <- Scorecard %>%
Scorecard <- Scorecard %>%
value
to x
.
```checking tests ...
``
...
inexact_anti_join(...) not equal to last_join %>% dplyr::select(-b) %>% dplyr::filter(FALSE).
Incompatible type for column
t2`: x logical, y numeric
[31m──[39m [31m4. Failure: Different inexact joins work (@test-inexact_join.R#206) [39m [31m───────────[39m
inexact_semi_join(left, right, var = t, jvar = t2, method = "last") not equal to last_join %>% dplyr::select(-b).
Incompatible type for column t2
: x logical, y numeric
[31m──[39m [31m5. Failure: Different inexact joins work (@test-inexact_join.R#213) [39m [31m───────────[39m
inexact_anti_join(left, right, var = t, jvar = t2, method = "last") not equal to last_join %>% dplyr::select(-b) %>% dplyr::filter(FALSE).
Incompatible type for column t2
: x logical, y numeric
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 296 | SKIPPED: 0 | WARNINGS: 16 | FAILED: 5 ] 1. Error: inexact_join input failstates (@test-bad_input.R#96) 2. Failure: Different inexact joins work (@test-inexact_join.R#162) 3. Failure: Different inexact joins work (@test-inexact_join.R#169) 4. Failure: Different inexact joins work (@test-inexact_join.R#206) 5. Failure: Different inexact joins work (@test-inexact_join.R#213)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"PML")
for more info
...
Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
Consider 'structure(list(), *)' instead.
Warning in structure(x, class = unique(c("AsIs", oldClass(x)))) :
Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
Consider 'structure(list(), *)' instead.
Warning in structure(x, class = unique(c("AsIs", oldClass(x)))) :
Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
Consider 'structure(list(), *)' instead.
Warning in structure(x, class = unique(c("AsIs", oldClass(x)))) :
Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
Consider 'structure(list(), *)' instead.
Warning in structure(x, class = unique(c("AsIs", oldClass(x)))) :
Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
Consider 'structure(list(), *)' instead.
Warning in structure(x, class = unique(c("AsIs", oldClass(x)))) :
Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
Consider 'structure(list(), *)' instead.
Warning in structure(x, class = unique(c("AsIs", oldClass(x)))) :
Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
Consider 'structure(list(), *)' instead.
Error: All columns in a tibble must be vectors:
Run revdep_details(,"projects")
for more info
checking examples ... ERROR ``` ...
New author's affiliations: [38;5;246m# A tibble: 4 x 4[39m affiliation_id department_name institution_name address [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [38;5;250m1[39m 1 Math Dept. Springfield College 123 College St, Spri… [38;5;250m2[39m 42 Art Department Springfield College 321 University Boule… [38;5;250m3[39m 2 Central Intelligence… United States Gove… 888 Classified Dr, W… [38;5;250m4[39m 3 Pyrotechnics ACME [31mNA[39m
new_project(title = "Test project 1", current_owner = "Plato", stage = 1) [38;5;246m# A tibble: 3 x 7[39m id given_names last_name title degree email phone [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [38;5;250m1[39m 13 Spiro Agnew [31mNA[39m LLB [31mNA[39m [31mNA[39m [38;5;250m2[39m 303 Plato [31mNA[39m [31mNA[39m [31mNA[39m [31mNA[39m [31mNA[39m [38;5;250m3[39m 1 Condoleezza Rice [31mNA[39m [31mNA[39m [31mNA[39m [31mNA[39m Error in validate_unique_entry(x = x, table = authors_table, what = "author", :
The entry NA matches multiple authors, seen above. Calls: new_project ... validate_special_authors -> lapply -> FUN -> validate_unique_entry Execution halted ```
checking tests ... ``` ... [90m 18. [39mprojects:::FUN(X[[i]], ...) [90m 19. [39mprojects:::validate_unique_entry(...) [90mrevdep/checks/projects/new/projects.Rcheck/00_pkg_src/projects/R/class-projects_author.R:115:2[39m
[31m──[39m [31m4. Error: Setup works (@test-setup.R#183) [39m [31m─────────────────────────────────────[39m
No common type for current_owner
and current_owner
.
[1mBacktrace:[22m
[90m 1. [39mtestthat::expect_identical(...)
[90m 10. [39mvctrs:::vec_ptype2.default(x = x, y = y, x_arg = x_arg, y_arg = y_arg)
[90m 11. [39mvctrs::stop_incompatible_type(x, y, x_arg = x_arg, y_arg = y_arg)
[90m 12. [39mvctrs:::stop_incompatible(...)
[90m 13. [39mvctrs:::stop_vctrs(...)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 14 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ] 1. Failure: Setup works (@test-setup.R#129) 2. Failure: Setup works (@test-setup.R#147) 3. Failure: Setup works (@test-setup.R#157) 4. Error: Setup works (@test-setup.R#183)
Error: testthat unit tests failed Execution halted ```
Namespace in Imports field not imported from: ‘methods’
All declared Imports should be used.
Run revdep_details(,"psychmeta")
for more info
checking examples ... ERROR ``` ...
mean var var_res
qxa_irr 0.905 0.001 0.001 qxa_drr 0.905 0.001 0.001 qxi_irr 0.856 0.002 0.001 qxi_drr 0.856 0.002 0.001 rxxa_irr 0.819 0.003 0.002 rxxa_drr 0.819 0.003 0.002 rxxi_irr 0.734 0.006 0.004 rxxi_drr 0.734 0.006 0.004 ux 0.825 0.004 0.000 ut 0.781 0.005 0.000
create_ad(ad_type = "int", rxxa = c(.9, .8), n_rxxa = c(50, 150), + rxxi = c(.8, .7), n_rxxi = c(50, 150), + ux = c(.9, .8), ni_ux = c(50, 150)) Error: All columns in a tibble must be vectors: ```
Run revdep_details(,"rbin")
for more info
checking examples ... ERROR ``` Running examples in ‘rbin-Ex.R’ failed The error most likely occurred in:
Name: rbin_create
Title: Create dummy variables
Aliases: rbin_create
** Examples
k <- rbin_manual(mbank, y, age, c(29, 39, 56)) rbin_create(mbank, age, k) New names: ```
checking tests ... ``` ... Predictor education Levels 4 Count 4521 Goods 517 Bads 4004 Entropy 0.51 Information Value 0.05
# A tibble: 4 x 7 level bin_count good bad woe iv entropy 1 tertiary 1299 195 1104 -0.313 0.0318 0.610 2 secondary 2352 231 2121 0.170 0.0141 0.463 3 unknown 179 25 154 -0.229 0.00227 0.583 4 primary 691 66 625 0.201 0.00572 0.455══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 10 | SKIPPED: 5 | WARNINGS: 0 | FAILED: 1 ] 1. Error: output from rbin_create is as expected as expected (@test-bins.R#30)
Error: testthat unit tests failed Execution halted ```
Namespace in Imports field not imported from: ‘utils’
All declared Imports should be used.
Run revdep_details(,"readwritesqlite")
for more info
checking tests ...
``
...
>
> test_check("readwritesqlite")
[31m──[39m [31m1. Failure: initialized even with no rows of data (@test-write.R#592) [39m [31m─────────[39m
remotenot identical to
local`.
Component "geometry": Attributes: < Names: 3 string mismatches >
Component "geometry": Attributes: < Length mismatch: comparison on first 5 components >
Component "geometry": Attributes: < Component "bbox": Attributes: < Length mismatch: comparison on first 1 components > >
Component "geometry": Attributes: < Component "bbox": 'is.NA' value mismatch: 0 in current 4 in target >
Component "geometry": Attributes: < Component "class": 1 string mismatch >
Component "geometry": Attributes: < Component 3: Modes: character, list >
Component "geometry": Attributes: < Component 3: Lengths: 0, 2 >
Component "geometry": Attributes: < Component 3: names for current but not for target >
Component "geometry": Attributes: < Component 3: Attributes: < target is NULL, current is list > >
...
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 443 | SKIPPED: 0 | WARNINGS: 27 | FAILED: 1 ] 1. Failure: initialized even with no rows of data (@test-write.R#592)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"REDCapR")
for more info
checking tests ... ``` ERROR Running the tests in ‘tests/test-all.R’ failed. Complete output: > # Modeled after the R6 testing structure: https://github.com/wch/R6/blob/master/tests/testthat.R > library(testthat) > library(REDCapR) > > testthat::test_check("REDCapR") [31m──[39m [31m1. Failure: validate_no_logical -concern dataset (@test-validate.R#36) [39m [31m────────[39m ds$field_index not equal to 2. names for target but not for current
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 135 | SKIPPED: 79 | WARNINGS: 0 | FAILED: 1 ] 1. Failure: validate_no_logical -concern dataset (@test-validate.R#36)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"rematch2")
for more info
checking examples ... ERROR
...
> pos <- re_exec(notables, name_rex)
> pos
Error: Expected a vector, not a `rematch_records` object
[1m<error/vctrs_error_scalar_type>[22m
Expected a vector, not a `rematch_records` object
[1mBacktrace:[22m
[90m [39m█
[90m 1. [39m├─(function (x, ...) ...
[90m 2. [39m├─tibble:::print.tbl(x)
[90m 3. [39m│ ├─tibble:::cat_line(format(x, ..., n = n, width = width, n_extra = n_extra))
[90m 4. [39m│ │ ├─base::cat(paste0(..., "\n"), sep = "")
[90m 5. [39m│ │ └─base::paste0(..., "\n")
[90m 6. [39m│ ├─base::format(x, ..., n = n, width = width, n_extra = n_extra)
[90m 7. [39m│ └─tibble:::format.tbl(x, ..., n = n, width = width, n_extra = n_extra)
[90m 8. [39m│ └─tibble::trunc_mat(x, n = n, width = width, n_extra = n_extra)
[90m 9. [39m│ ├─base::as.data.frame(head(x, n))
[90m 10. [39m│ ├─utils::head(x, n)
[90m 11. [39m│ └─utils:::head.data.frame(x, n)
[90m 12. [39m│ ├─x[seq_len(n), , drop = FALSE]
[90m
Execution halted
checking tests ... ``` ... [90m 8. [39mvctrs:::stop_scalar_type(...) [90m 9. [39mvctrs:::stop_vctrs(msg, "vctrs_error_scalar_type", actual = x)
[31m──[39m [31m4. Failure: capture groups (@test-exec-all.R#71) [39m [31m──────────────────────────────[39m as.data.frame(res) not equal to asdf(...). Names: 1 string mismatch
[31m──[39m [31m5. Failure: scalar text with capure groups (@test-exec-all.R#92) [39m [31m──────────────[39m as.data.frame(res) not equal to asdf(...). Names: 1 string mismatch
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 65 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 5 ] 1. Failure: capture groups (@test-all.R#40) 2. Failure: scalar text with capure groups (@test-all.R#55) 3. Error: corner cases (@test-exec-all.R#46) 4. Failure: capture groups (@test-exec-all.R#71) 5. Failure: scalar text with capure groups (@test-exec-all.R#92)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"RmarineHeatWaves")
for more info
[<-
(...) [90m00_pkg_src/RmarineHeatWaves/R/RmarineHeatWaves.R:265:4[39m
[90m 3. [39m│ └─tibble:::[<-.tbl_df
(...) [90m00_pkg_src/RmarineHeatWaves/R/RmarineHeatWaves.R:265:4[39m
[90m 4. [39m│ └─tibble:::tbl_subassign(x, i, j, value)
[90m 5. [39m│ └─tibble:::tbl_subassign_row(xj, i, value)
[90m 6. [39m│ └─vctrs::vec_slice<-
(*tmp*
, i, value = value[[j]])
[90m 7. [39m├─vctrs:::vec_cast_dispatch(x = x, to = to, x_arg = x_arg, to_arg = to_arg)
[90m 8. [39m├─vctrs::vec_cast.double(x = x, to = to, x_arg = x_arg, to_arg = to_arg)
[90m 9. [39m└─vctrs:::vec_cast.double.double(...)
[90m 10. [39m └─vctrs:::shap
Execution halted
```Run revdep_details(,"rsample")
for more info
checking tests ... ``` ... > test_check(package = "rsample") [31m──[39m [31m1. Failure: Bootstrap estimate of mean is close to estimate of mean from normal [39m ttest$estimate not equal to single_pct_res$.estimate. names for target but not for current
[31m──[39m [31m2. Failure: Bootstrap estimate of mean is close to estimate of mean from normal [39m ttest$estimate not equal to single_t_res$.estimate. names for target but not for current
[31m──[39m [31m3. Failure: Bootstrap estimate of mean is close to estimate of mean from normal [39m ttest$estimate not equal to single_bca_res$.estimate. names for target but not for current
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 529 | SKIPPED: 0 | WARNINGS: 13 | FAILED: 3 ] 1. Failure: Bootstrap estimate of mean is close to estimate of mean from normal distribution (@test_bootci.R#53) 2. Failure: Bootstrap estimate of mean is close to estimate of mean from normal distribution (@test_bootci.R#63) 3. Failure: Bootstrap estimate of mean is close to estimate of mean from normal distribution (@test_bootci.R#73)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"RSDA")
for more info
checking examples ... ERROR ``` Running examples in ‘RSDA-Ex.R’ failed The error most likely occurred in:
Name: VeterinaryData
Title: Symbolic interval data example
Aliases: VeterinaryData
Keywords: datasets
** Examples
data(VeterinaryData) VeterinaryData Error in get(x, envir = ns, inherits = FALSE) : object 'check_names_df' not found Calls: ... head.data.frame -> [ -> [.symbolic_tbl -> getFromNamespace -> get Execution halted ```
checking tests ... ``` ... Attaching package: 'RSDA'
The following objects are masked from 'package:stats':
cor, sd, var
test_check("RSDA") [31m──[39m [31m1. Failure: multiplication works (@test-read_sym_table.R#9) [39m [31m───────────────────[39m is.sym.modal(sym.table$F3) isn't true.
[31m──[39m [31m2. Failure: multiplication works (@test-read_sym_table.R#11) [39m [31m──────────────────[39m is.sym.set(sym.table$F5) isn't true.
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 24 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ] 1. Failure: multiplication works (@test-read_sym_table.R#9) 2. Failure: multiplication works (@test-read_sym_table.R#11)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"rubias")
for more info
...
>
> # note that in practice you will probably want to specify
> # your own directory...
>
> # run the function
> write_gsi_sim_mixture(chinook_mix, 5, prefix)
Error: No common type for `value` <double> and `x` <character>.
[1m<error/vctrs_error_incompatible_type>[22m
No common type for `value` <double> and `x` <character>.
[1mBacktrace:[22m
[90m [39m█
[90m 1. [39m├─rubias::write_gsi_sim_mixture(chinook_mix, 5, prefix)
[90m 2. [39m│ ├─base::`[<-`(`*tmp*`, is.na(mix), value = 0) [90m00_pkg_src/rubias/R/write_gsi_sim_mixture.R:36:2[39m
[90m 3. [39m│ └─tibble:::`[<-.tbl_df`(`*tmp*`, is.na(mix), value = 0) [90m00_pkg_src/rubias/R/write_gsi_sim_mixture.R:36:2[39m
[90m 4. [39m│ └─tibble:::tbl_subassign_matrix(x, j, value)
[90m 5. [39m│ └─tibble:::map2(x[col_idx], cells[col_idx], `vec_slice<-`, value)
[90m 6. [39m│ └─base::mapply(.f, .x, .y, MoreArgs = list(...), SIMPLIFY = FALSE)
[90m 7. [39m│ └─(function (x, i, value) ...
[90m 8. [39m├─vctrs:::vec_type2_dispatch(x = x, y = y, x_arg = x_arg, y_arg = y_arg)
[90m 9. [39m├─vctrs::vec_ptype2.
Execution halted
checking installed package size ... NOTE
installed size is 10.4Mb
sub-directories of 1Mb or more:
libs 8.5Mb
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
Run revdep_details(,"ruler")
for more info
checking tests ... ``` ... [90m 8. [39mdplyr:::all.equal.tbl_df(...) [90m 9. [39mdplyr:::equal_data_frame(...)
[31m──[39m [31m2. Failure: new_pack_info removes names inside .packs
(@test-exposure.R#118) [39m
identical(output, input_packs_info) isn't true.
[31m──[39m [31m3. Error: is_exposure works (@test-exposure.R#166) [39m [31m────────────────────────────[39m
x
must be a vector, not a function
[1mBacktrace:[22m
[90m 1. [39mbase::[[<-
(...)
[90m 7. [39mvctrs:::stop_scalar_type(...)
[90m 8. [39mvctrs:::stop_vctrs(msg, "vctrs_error_scalar_type", actual = x)
══ testthat results ══════════════════════════════════════════════════════════════
[ OK: 299 | SKIPPED: 1 | WARNINGS: 2 | FAILED: 3 ]
1. Error: bind_exposures works (@test-expose-helpers.R#82)
2. Failure: new_pack_info removes names inside .packs
(@test-exposure.R#118)
3. Error: is_exposure works (@test-exposure.R#166)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"SanzCircos")
for more info
checking examples ... ERROR ``` Running examples in ‘SanzCircos-Ex.R’ failed The error most likely occurred in:
Name: make_circos_links
Title: make_circos_links
Aliases: make_circos_links
** Examples
links_df <- data.frame(chrom = c(rep("chr1", 5), rep("chr2", 5)), + band = c(rep("band1", 3), rep("band2", 2), "band1", rep("band2", 4)), + link = c(1, 2, 3, 1, 2, 1, 1, 3, 4, 5), + start = c(1, 3, 5, 10, 35, 1, 5, 8, 13, 15), + end = c(3, 5, 10, 35, 39, 5, 8, 13, 15, 21))
links <- make_circos_links(links_df, "chrom", "band", "link", "start", "end", status = TRUE) Error: Lossy cast from
value
tox
. ```
Namespaces in Imports field not imported from:
‘purrr’ ‘tidyr’
All declared Imports should be used.
Run revdep_details(,"sclr")
for more info
checking tests ... ``` ... > test_check("sclr") [31m──[39m [31m1. Failure: protective titre is found correctly (@test-protection.R#12) [39m [31m───────[39m predict(fit, prot50_point)$prot_point not equal to 0.5. names for target but not for current
[31m──[39m [31m2. Failure: protective titre is found correctly (@test-protection.R#14) [39m [31m───────[39m predict(fit, prot50_low)$prot_l not equal to 0.5. names for target but not for current
[31m──[39m [31m3. Failure: protective titre is found correctly (@test-protection.R#16) [39m [31m───────[39m predict(fit, prot50_high)$prot_u not equal to 0.5. names for target but not for current
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 84 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ] 1. Failure: protective titre is found correctly (@test-protection.R#12) 2. Failure: protective titre is found correctly (@test-protection.R#14) 3. Failure: protective titre is found correctly (@test-protection.R#16)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"silicate")
for more info
checking examples ... ERROR ``` Running examples in ‘silicate-Ex.R’ failed The error most likely occurred in:
Name: TRI0
Title: TRI0 model, structural triangulations
Aliases: TRI0 TRI0.default TRI0.TRI TRI0.PATH0 TRI0.PATH
** Examples
tri <- TRI0(minimal_mesh) Error: Argument 5 must be length 12, not 2 Execution halted ```
checking tests ... ``` ... 1. testthat::expect_output(print(TRI0(minimal_mesh)))
[31m──[39m [31m2. Error: building sf works (@test-spatial-build.R#6) [39m [31m─────────────────────────[39m
x
must be a vector, not a sfc_MULTIPOLYGON/sfc
object
[1mBacktrace:[22m
[90m 1. [39mtestthat::expect_s3_class(build_sf(PATH(minimal_mesh)), "sf")
[90m 12. [39mvctrs:::stop_scalar_type(...)
[90m 13. [39mvctrs:::stop_vctrs(msg, "vctrs_error_scalar_type", actual = x)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 92 | SKIPPED: 7 | WARNINGS: 1 | FAILED: 2 ] 1. Error: print works (@test-print.R#11) 2. Error: building sf works (@test-spatial-build.R#6)
Error: testthat unit tests failed Execution halted ```
Namespace in Imports field not imported from: ‘geometry’
All declared Imports should be used.
Run revdep_details(,"simrel")
for more info
checking tests ... ``` ... ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(simrel) > > test_check("simrel") [31m──[39m [31m1. Error: Prepare Design (@test-utils.R#44) [39m [31m───────────────────────────────────[39m Can't join on 'q' x 'q' because of incompatible types (list / list) [1mBacktrace:[22m [90m 1. [39mtestthat::expect_identical(prepare_design(opts), dgn) [90m 3. [39mtestthat:::compare.default(act$val, exp$val) [90m 5. [39mdplyr:::all.equal.tbl_df(x, y, ...) [90m 6. [39mdplyr:::equal_data_frame(...)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 169 | SKIPPED: 21 | WARNINGS: 3 | FAILED: 1 ] 1. Error: Prepare Design (@test-utils.R#44)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"skimr")
for more info
checking tests ... ``` ...
[31m──[39m [31m6. Failure: You can use tidyselect negation (@test-skim.R#795) [39m [31m────────────────[39m input$skim_variable not identical to "feed". names for target but not for current
[31m──[39m [31m7. Failure: Tidyselect helpers work as expected (@test-skim.R#804) [39m [31m────────────[39m input$skim_variable not identical to c("Sepal.Length", "Sepal.Width"). names for target but not for current
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 564 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ] 1. Failure: skim returns expected response for numeric vectors (@test-skim.R#34) 2. Failure: skim returns expected response for factor vectors (@test-skim.R#178) 3. Failure: skim returns expected response for logical vectors (@test-skim.R#267) 4. Failure: skim returns expected response for complex vectors (@test-skim.R#319) 5. Failure: skim returns expected response for ts vectors (@test-skim.R#398) 6. Failure: You can use tidyselect negation (@test-skim.R#795) 7. Failure: Tidyselect helpers work as expected (@test-skim.R#804)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"srvyr")
for more info
checking tests ...
``
...
Incompatible type for column
survey_ratio_low: x numeric, y matrix
Incompatible type for column
survey_ratio_upp`: x numeric, y matrix
[31m──[39m [31m2. Failure: deff and df work for grouped survey mean (@expect-equality.R#61) [39m [31m──[39m
x
not equal to y
.
Incompatible type for column survey_mean_low
: x numeric, y matrix
Incompatible type for column survey_mean_upp
: x numeric, y matrix
[31m──[39m [31m3. Failure: deff and df work for grouped survey total (@expect-equality.R#61) [39m [31m─[39m
x
not equal to y
.
Incompatible type for column survey_total_low
: x numeric, y matrix
Incompatible type for column survey_total_upp
: x numeric, y matrix
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 201 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ] 1. Failure: deff and df work for grouped survey total (@expect-equality.R#61) 2. Failure: deff and df work for grouped survey mean (@expect-equality.R#61) 3. Failure: deff and df work for grouped survey total (@expect-equality.R#61)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"stminsights")
for more info
combine estimates for interaction effects
prep_int <- estimateEffect(1:3 ~ treatment * s(pid_rep),
effects_int <- get_effects(estimates = prep_int,
Namespaces in Imports field not imported from:
‘huge’ ‘readr’ ‘scales’ ‘shinyjs’
All declared Imports should be used.
Run revdep_details(,"taxa")
for more info
checking tests ... ``` ... > test_check("taxa") [31m──[39m [31m1. Failure: Taxmap can be intialized from complex data (@test--taxmap_parsers.R#[39m test_obj$data$my_data$taxon_id not equal to c("j", "i"). names for target but not for current
[31m──[39m [31m2. Failure: Taxmap can be intialized from complex data (@test--taxmap_parsers.R#[39m test_obj$data$my_data$taxon_id not equal to c("j", "i"). names for target but not for current
[31m──[39m [31m3. Failure: Taxmap can be intialized from complex data (@test--taxmap_parsers.R#[39m test_obj$data$my_data$taxon_id not equal to c("j", "i"). names for target but not for current
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 607 | SKIPPED: 2 | WARNINGS: 1 | FAILED: 3 ] 1. Failure: Taxmap can be intialized from complex data (@test--taxmap_parsers.R#52) 2. Failure: Taxmap can be intialized from complex data (@test--taxmap_parsers.R#56) 3. Failure: Taxmap can be intialized from complex data (@test--taxmap_parsers.R#60)
Error: testthat unit tests failed Execution halted ```
Namespaces in Imports field not imported from:
‘knitr’ ‘lazyeval’ ‘rlang’ ‘tidyr’
All declared Imports should be used.
Run revdep_details(,"textrecipes")
for more info
checking examples ... ERROR ``` ... [3m[38;5;246m[39m[23m [38;5;250m1[39m [38;5;246m[39m [38;5;250m2[39m [38;5;246m[39m > > juice(okc_obj) %>%
tidy(okc_rec, number = 2) [38;5;246m# A tibble: 1 x 3[39m terms value id [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m [38;5;250m1[39m essay0 [31mNA[39m stem_8wQnr tidy(okc_obj, number = 2) Error: All columns in a tibble must be vectors: ```
checking tests ...
``
...
[90m 7. [39mtextrecipes:::tidy.step_untokenize(x$steps[[number]], ...)
[90m 8. [39mtibble::tibble(terms = x$terms, value = x$sep) [90mrevdep/checks/textrecipes/new/textrecipes.Rcheck/00_pkg_src/textrecipes/R/untokenize.R:147:4[39m
[90m 9. [39mtibble:::tibble_quos(xs[!is_null], .rows, .name_repair)
[90m 10. [39mtibble:::check_valid_col(res, col_names[[j]], j)
[90m 11. [39mtibble:::check_valid_cols(list2(
:=`(!!name, x)))
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 79 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 10 ] 1. Error: hashing gives double outputs (@test-hashing.R#31) 2. Error: stemming is done correctly (@test-stem.R#32) 3. Error: custom stemmer works (@test-stem.R#55) 4. Error: stopwords are removed correctly (@test-stopwords.R#33) 5. Error: step_tf works as intended (@test-tf.R#47) 6. Error: step_tfidf works as intended (@test-tfidf.R#50) 7. Error: tokenfilter removes words correctly using min_times and max_times (@test-tokenfilter.R#47) 8. Error: tokenization is done correctly (@test-tokenize.R#40) 9. Error: merging is done correctly (@test-tokenmerge.R#38) 10. Error: output is not a list (@test-untokenize.R#27)
Error: testthat unit tests failed Execution halted ```
Namespace in Imports field not imported from: ‘lifecycle’
All declared Imports should be used.
Run revdep_details(,"tidyr")
for more info
checking tests ... ``` ... Attributes: < target is NULL, current is list >
[31m──[39m [31m11. Failure: values_summarize applied even when no-duplicates (@test-pivot-wide.[39m pv$x not equal to list_of(1L, 2L). Attributes: < target is NULL, current is list >
══ testthat results ══════════════════════════════════════════════════════════════
[ OK: 551 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 11 ]
1. Failure: optionally keep empty rows (@test-chop.R#57)
2. Failure: gather throws error for weird objects (@test-gather.R#141)
3. Failure: tibble conversion occurs in the nest.data.frame()
method (@test-nest.R#71)
4. Failure: can nest multiple columns (@test-nest.R#80)
5. Failure: can nest multiple columns (@test-nest.R#81)
6. Failure: can control name_repair (@test-pack.R#68)
7. Failure: can pivot all cols to long (@test-pivot-long.R#8)
8. Failure: can drop missing values (@test-pivot-long.R#43)
9. Failure: duplicated keys produce list column with warning (@test-pivot-wide.R#73)
1. ...
Error: testthat unit tests failed Execution halted ```
Note: found 24 marked UTF-8 strings
Run revdep_details(,"units")
for more info
checking tests ... ``` ... ..$ numerator : chr "m" ..$ denominator: chr "s" ..- attr(*, "class")= chr "symbolic_units" Mixed units: mg (3), mm (3) 1e+06 [mm], 2e+06 [mm], 3e+06 [mm], 4000 [mg], 5000 [mg], 6000 [mg] [31m──[39m [31m1. Error: mixed units work (@test_mixed.R#46) [39m [31m─────────────────────────────────[39m All columns in a tibble must be vectors:
m
is mixed_units
[1mBacktrace:[22m
[90m 1. [39mbase::print(tibble::tibble(m))
[90m 2. [39mtibble::tibble(m)
[90m 3. [39mtibble:::tibble_quos(xs[!is_null], .rows, .name_repair)
[90m 4. [39mtibble:::check_valid_col(res, col_names[[j]], j)
[90m 5. [39mtibble:::check_valid_cols(list2(:=
(!!name, x)))══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 416 | SKIPPED: 6 | WARNINGS: 13 | FAILED: 1 ] 1. Error: mixed units work (@test_mixed.R#46)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"wtss")
for more info
checking examples ... ERROR ``` ...
..1$start_date
and ..2$start_date
.
[1m[22m
No common type for ..1$start_date
and ..2$start_date
.
[1mBacktrace:[22m
[90m [39m█
[90m 1. [39m├─wtss::time_series(...)
[90m 2. [39m│ └─wtss:::.wtss_to_tibble(...) [90m00_pkg_src/wtss/R/wtss_time_series.R:129:4[39m
[90m 3. [39m│ └─tibble::add_row(...) [90m00_pkg_src/wtss/R/wtss_tibble.R:73:4[39m
[90m 4. [39m│ └─tibble:::rbind_at(.data, df, pos)
[90m 5. [39m│ └─vctrs::vec_rbind(old, new)
[90m 6. [39m├─vctrs:::vec_type2_dispatch(x = x, y = y, x_arg = x_arg, y_arg = y_arg)
[90m 7. [39m├─vctrs:::vec_ptype2.tbl_df(x = x, y = y, x_arg = x_arg, y_arg = y_arg)
[90m 8. [39m├─vctrs:::vec_ptype2.tbl_df.data.frame(...)
[90m 9. [39m│ └─vctrs:::df_as_tibble(.Call(vctrs_type2_df_df, x, y, x_arg, y_arg))
[90m 10. [39m├─vctrs:::vec_type2_dispatch(
Execution halted
```checking tests ... ``` ... [90m 14. [39mvctrs::stop_incompatible_type(x, y, x_arg = x_arg, y_arg = y_arg) [90m 15. [39mvctrs:::stop_incompatible(...) [90m 16. [39mvctrs:::stop_vctrs(...)
[31m──[39m [31m2. Error: Time Series - conversion to ts and zoo (@test_wtss.R#90) [39m [31m────────────[39m
No common type for ..1$start_date
and ..2$start_date
.
[1mBacktrace:[22m
[90m 1. [39mwtss::time_series(...)
[90m 12. [39mvctrs:::vec_ptype2.Date.default(...)
[90m 13. [39mvctrs::vec_default_ptype2(x, y, x_arg = x_arg, y_arg = y_arg)
[90m 14. [39mvctrs::stop_incompatible_type(x, y, x_arg = x_arg, y_arg = y_arg)
[90m 15. [39mvctrs:::stop_incompatible(...)
[90m 16. [39mvctrs:::stop_vctrs(...)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 23 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ] 1. Error: Time Series (@test_wtss.R#49) 2. Error: Time Series - conversion to ts and zoo (@test_wtss.R#90)
Error: testthat unit tests failed Execution halted ```
Run revdep_details(,"xpose")
for more info
checking examples ... ERROR
...
> ### ** Examples
>
> # Histogram of parameters
> prm_distrib(xpdb_ex_pk, type = 'h')
Dropped fixed variables ALAG1.
Using data from $prob no.1
Removing duplicated rows based on: ID
Tidying data by ID, SEX, MED1, MED2, DOSE ... and 23 more variables
>
> # Density plot of etas with a rug
> eta_distrib(xpdb_ex_pk, type = 'dr')
Using data from $prob no.1
Removing duplicated rows based on: ID
Tidying data by ID, SEX, MED1, MED2, DOSE ... and 23 more variables
>
> # Histogram of different residuals
> res_distrib(xpdb_ex_pk, type = 'hr', res = c('IWRES', 'CWRES'))
Using data from $prob no.1
Filtering data by EVID == 0
Error: `i` must have one dimension, not 2.
Execution halted
checking tests ...
``
...
[90m 4. [39mxpose::filter(data) [90mrevdep/checks/xpose/new/xpose.Rcheck/00_pkg_src/xpose/R/fetch_data.R:204:2[39m
[90m 6. [39mtibble:::
[.tbl_df`(x, x[, "EVID"] == 0, )
[90m 7. [39mtibble:::tbl_subset_row(xo, i = i)
[90m 8. [39mtibble:::vec_as_row_index(i, x)
[90m 9. [39mvctrs::vec_as_index(i, nr)
══ testthat results ══════════════════════════════════════════════════════════════ [ OK: 478 | SKIPPED: 6 | WARNINGS: 4 | FAILED: 29 ] 1. Error: only_obs function works properly (@test-fetch_data.R#15) 2. Error: fetch_data can get simple data (@test-fetch_data.R#30) 3. Error: fetch_data can tidy data (@test-fetch_data.R#43) 4. Error: xpose plot objects are returned with appropriate xpdb_ex_pk for plot_function dv_vs_pred (@test-directory.R#186) 5. Error: xpose plot objects are returned with appropriate xpdb_ex_pk for plot_function dv_vs_ipred (@test-directory.R#186) 6. Error: xpose plot objects are returned with appropriate xpdb_ex_pk for plot_function dv_vs_idv (@test-directory.R#186) 7. Error: xpose plot objects are returned with appropriate xpdb_ex_pk for plot_function ipred_vs_idv (@test-directory.R#186) 8. Error: xpose plot objects are returned with appropriate xpdb_ex_pk for plot_function pred_vs_idv (@test-directory.R#186) 9. Error: xpose plot objects are returned with appropriate xpdb_ex_pk for plot_function dv_preds_vs_idv (@test-directory.R#186) 1. ...
Error: testthat unit tests failed Execution halted ```
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