coloc.Sgl: Main function for calculating colocalization parameters

In kroemerlab/ColocalizR: ColocalizR

Description

Main function for calculating colocalization parameters

Usage

coloc.Sgl(
  MyImCl,
  Plate,
  Time,
  Well,
  Site,
  Blue = 1,
  Green = 2,
  Red = 3,
  auto1 = T,
  auto2 = T,
  auto3 = T,
  Cyto = "Compt 2",
  Nuc.rm = T,
  Seg.method = "Fast",
  TopSize1 = 29,
  TopSize2 = 29,
  TopSize3 = 29,
  w1OFF = 0.1,
  w2OFF = 0.15,
  w3OFF = 0.1,
  Nuc.denoising = T,
  NucWindow = 50,
  RO.size = 25,
  SegCyto.met = "Automated",
  CytoWindow = 50,
  CytoOFF = 0.1,
  Rm1 = c(0, 0.3),
  Rm2 = c(0, 0.1),
  Rm3 = c(0, 0.1),
  adj = 1,
  adj.step1 = 2,
  adj.step2 = 2,
  adj.step3 = 2,
  getCell = F,
  add.features = F,
  writeSeg = T,
  writePDF = F,
  TEST = F,
  FullIm = F,
  getRange = c(F, F, F),
  path = "..."
)

kroemerlab/ColocalizR documentation built on Aug. 18, 2021, 2:29 p.m.